KEGG   Amborella trichopoda: 18443441
Entry
18443441          CDS       T02990                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X2
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
atr  Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:atr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:atr03036]
    18443441
   03400 DNA repair and recombination proteins [BR:atr03400]
    18443441
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    18443441
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     18443441
SSDB
Motif
Pfam: MMS19_N MMS19_C SHQ1
Other DBs
NCBI-GeneID: 18443441
NCBI-ProteinID: XP_006853692
LinkDB
Position
Unknown
AA seq 1160 aa
MASTASWIPHVEVFVDPSRSKDQQDASLNVIATLMKKDTLTLEALVQEMEVYLTTTDASV
RSRGILLVAELLSYLASKPIDGAIIHSLTEFFTSRLADWQALRGAFIGCLALLRRKSHTG
TISDNDLINLTKSFLLNIQVQALALHDRLLCLELLECLLDQFPSVISVLDDELVYGVLAA
IDEEKDPRCLMLVFHVVELLVQVFPDPSVAKDAFDILGRYFPIYFTRPNVDAIDIKREDL
SRRMMNAFSSSPLFEPFCIPLLLEKLSSSLEMAKLDALKYLSHCAPRYGPSRMASHAYAI
WSALKDVIFNLSSHGPSISIICELPDNLGSQENEVVKEALVCLENCVLVFDIPKDETFLR
LIVEDEDLEMTFRSITSEKCNKDLPHERKQRFCALRNILFTSAKVSSACCNRVFGSFFQR
LMNFLRISSLDSPFDWASNRNSYVCVELDFEALHICLELIAASNHLANALSSQEVCPTPT
QDPWLLLLQSFSGCLVFALGSSVVANKSSSIREMSPSIGEEDLPLKVTGLQILATFPDSY
SPLSRDAFENILAVFMSVITERYEETSLWTSTLKALVQVGMSIERYHDSQRGVCFMTIVI
EKLLSYLFNRSTFPPLSLNLKAISEIAMMGLCFMKRVTKGFGEALSTNFLEAVAEGNTKS
AEMAIEILKCYSLYLLPWLQNKEGFEEDAMHLATDIWSYMESISFCIGSHGKSLLEATMM
AMKLAVGCCTMNQQSSIVSKAHNILASSTLYLVKDSMSLSTSVQLEKLKITPESVSSACK
DGWLISLFASVVIALQPQTVIPDLRIILELFMIVVLLKGDEASAQALGSIVNKWPVKSNE
VSGACTLGEAMDIMVERGFRPIIFNVNQKKHEDVDNNKEIVSHLPISNDSRVHALFGLAW
IGKGLVMRGHEKVKDITLLLLSCVLPTGGMRSMPSQHDVLGNDGGESINIAVARSAADAF
HIIMSDSETSVNQKFHATIRPLYKQRFCSTVMPILLSSIKESHSSITKSMLFRTFGHIII
GTPLAAILIEAPKIVPPLLDGLSMLTLDVQNKDQIYDLLVVLSGILMDETGKEAVVENAH
TIIGCLSKLVTYPHLMIVRETAIQCLVAMAALPHARIYPMRLQVLETVSKALDDQKRSVR
QEAVRCHHVWASMASRSLRF
NT seq 3483 nt   +upstreamnt  +downstreamnt
atggcgtcaaccgcctcctggattccgcatgttgaagtcttcgtcgacccctcgcgctct
aaggatcaacaggatgctagtcttaatgtaattgctacacttatgaagaaagatacctta
acgctagaagcattggttcaggagatggaggtgtatttaaccactacagatgcttcagtt
cgttcaagaggcatacttcttgtagccgaacttcttagttatcttgcttcaaagccgata
gatggagctataatccatagcttgactgaattcttcacatctcgactggcagattggcaa
gctttacgaggagcgtttattggttgtttggcacttttgagaagaaagagtcatactggc
acaatctcagacaacgatctaataaatcttaccaagtctttcttgttgaatatacaagtg
caggctttagcactgcatgatcgccttttgtgccttgaacttctggaatgtcttttggat
cagtttccatctgtaatttctgtgctggatgatgagttggtatatggagttcttgctgca
attgatgaagaaaaggatcctcggtgcttgatgcttgtgtttcatgttgttgagcttttg
gtgcaagtatttccagatcccagtgtggcaaaagatgcttttgatatattgggtcgctat
tttcctatatatttcactcgtcctaatgttgatgctattgatatcaaaagagaggacctt
tcaagaaggatgatgaatgctttttcgtcatctcctttatttgagccattttgcatccct
ttgctgcttgagaagctttcctcctccctggagatggccaagcttgatgctctgaagtac
ctcagccattgtgctcctcgatatgggccaagcaggatggcaagtcatgcttatgctatc
tggtctgctttgaaagatgtgatttttaatctatcatcacatggaccatcgatttccata
atttgtgaattgccagacaatttgggatctcaggagaatgaagttgtaaaggaagctcta
gtttgtttggaaaattgtgtcctggtattcgacattccaaaggatgaaacatttttgaga
ctgattgttgaagatgaagaccttgagatgactttcaggtctattacaagtgaaaaatgc
aacaaagatcttccccatgagagaaagcagagattttgtgcacttcgaaatatactattt
acttcagcaaaagtttcaagtgcttgttgtaacagagttttcggaagtttctttcaacgg
ttgatgaatttccttagaatttcttccttagactccccttttgattgggcttcaaataga
aacagttatgtttgtgttgaattggattttgaagcccttcatatctgtcttgaattgatc
gcagcgagcaatcatttggctaatgctttatcttctcaagaggtttgtccaactccaacc
caagatccctggctcctattgctccaatccttttctggatgcttagttttcgctctcgga
tcttctgttgtagcaaataaaagcagttccattagagagatgagcccatccattggagag
gaagaccttccactaaaagtgacaggcttgcaaattttggcaacgtttccggactcttac
tcgcctctatcaagagatgcatttgaaaatatcttggcagtgtttatgtctgtcattact
gagaggtatgaagagacatctttgtggacatcaacattaaaggccttggtgcaagttggc
atgtccattgagaggtatcatgattctcaaaggggggtgtgttttatgacaattgtcatt
gaaaagcttctttcatatctcttcaatcgttcaacctttcctccactctctctgaatttg
aaggcaatatctgagattgctatgatggggctgtgttttatgaagcgagtgacaaaaggg
tttggagaggctttgtctaccaatttcttggaggctgttgctgaaggaaatacgaaatct
gctgagatggcaattgagattctgaagtgctattctttatatttactcccctggttgcag
aacaaggaaggatttgaggaagatgcaatgcatcttgctactgacatttggtcctatatg
gaaagcatcagtttctgtattggaagtcatgggaagagccttttagaagcaaccatgatg
gcaatgaagttagctgttgggtgttgtacaatgaaccaacaaagttcaattgtatcgaag
gctcataacatacttgcatcaagcacgttgtacctcgttaaagattctatgtcactctct
acctctgtccagttggagaagctaaaaattactccagaatcagtttctagtgcttgtaaa
gatggatggttaatatcgctttttgcttcagtagttatagcacttcaaccacagacagtt
attcctgatctgaggataatattagagctgtttatgattgtagtccttctgaaaggagat
gaagcctcagctcaagccttgggatctattgttaacaaatggcctgtaaaaagcaatgag
gtgtctggtgcttgtactctgggtgaagctatggacattatggttgaaagggggtttcgt
cccattatttttaatgttaatcagaagaaacatgaagatgtggataacaataaagaaatt
gttagccatttgcccatcagcaatgacagtcgggttcacgctttatttggtttggcatgg
atagggaaaggattggttatgcgagggcatgagaaagttaaggacataacattgcttctc
ttgagttgcgtactcccaactggtggaatgaggtccatgccatcccaacatgatgtattg
ggtaatgatggtggagagagtatcaacattgctgttgcaagatctgcagcagatgcgttt
catattattatgagtgattcagaaacttctgtaaaccaaaaatttcatgcaaccatacgg
ccactttataaacaacgtttctgctcaactgtaatgcccattttgctttcatctatcaaa
gaatctcactcatccatcaccaaatcaatgctgtttcgcacttttgggcatattattatt
ggcactccacttgctgcgattcttattgaagcacctaagatcgtacctcccttgttggat
ggtttgtccatgcttactctagatgttcaaaacaaagaccagatttatgatcttttggtg
gtgttatctggtatattgatggatgagactggaaaggaagcagtagtggaaaatgcacat
actatcattggctgtctttccaaacttgttacctatccccatttgatgattgttagggag
acagcaattcaatgtcttgtggcaatggctgcattgccccatgcaaggatttatcccatg
aggttacaggtcctagaaactgtttcaaaggctctggatgaccaaaagaggtctgtgcgt
caagaagctgtaagatgtcatcacgtatgggcttccatggcatcaagatctttgcgcttt
tga

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