Amborella trichopoda: 18443535
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Entry
18443535 CDS
T02990
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18443535
Transcription machinery [BR:
atr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
18443535
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Phosphonate-bd
Motif
Other DBs
NCBI-GeneID:
18443535
NCBI-ProteinID:
XP_006853783
LinkDB
All DBs
Position
Unknown
AA seq
564 aa
AA seq
DB search
MVPGFYLHRQWSFGSHLNSNGFSQYSHISPPFHQPAHNTSPLKSKQPSIESAKASTLSVI
PEETERLLGDCTKDFPYFFGDIQNANSSHDITEEMKMNINKNKPDASLYVIDKAELPIAE
DTFSNVAGLPHFSFLFENLEKIEGIIVDSGNARLEREILLHIERLGALKLFHAFLSRTLK
DPKILDVTGTCPEHAMVQPMDEQADGYIVSSGKKVERKAQRERALKKVTDEPIVCSSLKR
VKKSTKSINAALTHKGHPGNSKSRSHLRAQSEVEMSRGVQEVAKLEKIRANLEENLGRDA
SFSVWAEAAGINEKVLKQQLHFGWFCRDKLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGS
LGVLQGAERFDHTRGYRFSTYVQYWIRKSLSALVARHSRGVQIPMALNKVLNQTVKAKRA
LHQMHGRHPREVEIAEFTGLSLVNVRLANKCLRVHGSIDQRIGDNWGATYMEVTADTFIE
TPEKMVMKQHMREAIHEVLVNLHPREKQVLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRK
IEKMALEKVRKEEVQCNLNFFLNS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggttcctggtttctatttacacaggcaatggagcttcggatcacacctcaactcaaat
gggttttctcaatactctcatatctcccctccatttcatcaaccagctcacaatacttct
ccattgaaaagcaagcagccctcaattgaatcagcaaaagcgtcgaccctgtcagtcatc
cctgaagagactgaaagactactcggtgattgcacgaaagatttcccatatttctttgga
gacatacaaaatgcaaatagcagccatgacattactgaagagatgaagatgaatatcaat
aagaataagcccgatgcgtccctatatgtgattgacaaggcagaactacctatagctgag
gatacattttctaatgttgctggtttaccacacttcagtttcttatttgaaaaccttgag
aaaatcgaaggcatcatagttgattcaggcaatgcaagactggagagagaaatactgttg
cacatagagaggctcggagcattgaaattattccatgcttttctatctaggaccctaaaa
gatcccaaaattttagatgttactggaacatgtcctgaacatgcaatggttcagcccatg
gatgagcaagcagatggttacattgtttcctctggtaaaaaggtggagagaaaagctcaa
agagagagagctttaaagaaggtgaccgatgagcccattgtgtgctcttctttgaaaaga
gttaaaaaatcaactaaatctatcaatgcagccttgacccataagggtcatcctggaaat
tcaaaatccagaagccatttgagagctcaaagtgaagtggagatgtcaagaggggttcag
gaagttgcaaaattggaaaagattcgtgcaaatttggaagagaatcttggacgagatgca
agtttttctgtgtgggcagaggcagccggaatcaatgagaaggtgttgaagcagcaactg
catttcggttggttctgcagagataagcttctaagaagcacccgtcccttggttatgtac
cttgcaaaaagttacaggggaagggggatcggctttgaagatctacttcaggcagggagc
ttgggtgttcttcaaggtgctgagcggtttgaccacacaaggggttatcgtttctctacc
tatgtccagtattggatcagaaaatctctctctgcattggtggcacggcactccagggga
gtccagattcctatggccttgaacaaggtattaaaccaaactgtcaaagccaaaagggct
cttcatcagatgcatggaagacacccgagggaagttgagattgcagagttcaccggcttg
tcactagttaatgtaagattggcaaacaagtgcttgagagttcacggttccattgatcag
agaattggtgacaactggggtgcaacgtatatggaagtaacagctgatacattcattgaa
acacctgagaaaatggttatgaagcagcatatgagagaagccatccatgaggtcttggtc
aatttgcaccctagagagaagcaggtattgatgctgagatatggtctttgggacggtaga
tgcaagtcgcttgaagagattggaaggctatacaatgtaaccaaagaatggattagaaag
atagagaaaatggctctggaaaaggttaggaaggaggaagtccagtgcaatctaaacttc
tttctaaactcataa
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