Amborella trichopoda: 18443738
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Entry
18443738 CDS
T02990
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
atr03015
mRNA surveillance pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18443738
09122 Translation
03013 Nucleocytoplasmic transport
18443738
03015 mRNA surveillance pathway
18443738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18443738
03041 Spliceosome [BR:
atr03041
]
18443738
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18443738
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18443738
Spliceosome [BR:
atr03041
]
Complex C
Other components
EJC/TREX
18443738
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
18443738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
18443738
NCBI-ProteinID:
XP_006853982
UniProt:
U5CZ48
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEAKDNDTYQEELLDYEEEEEIAPDSITAKGASESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKELLKNECPHVVVGTPGRILA
LANDKDLNLKNVRHFILDECDKMLESLDMRKDVQSIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPESADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagcaaaggacaatgatacgtaccaggaggagcttctcgactacgaagaggag
gaggaaatagcccccgattccatcacggccaaaggtgccagtgaatcggtcaaaaagggc
tatgttgggattcacagttcaggatttagggactttcttttgaaaccagaacttcttcga
gctattgtggactctggatttgagcacccttcagaagtgcaacacgaatgcatccctcag
gctatccttgggatggatgtcatttgtcaagctaaatcggggatggggaaaacagctgtc
ttcgttctttcaaccctgcagcagattgagccagttacaggtcaagttgctgcgctggtt
ttgtgccatacgagggagttggcataccagatttgccatgagtttgagaggttcagcact
tatttgccggatattaaagttgctgtattttacggtggagtgaacatcaaaacccacaag
gaactgcttaaaaatgagtgccctcacgttgttgttggcacccctgggagaattttggct
ttggcaaatgataaagaccttaacttgaagaatgtcaggcatttcattcttgatgaatgt
gacaagatgcttgagtctcttgatatgcggaaagacgtgcagagcattttcaagatgact
cctcatgacaaacaggttatgatgttctcggctacgctcagcaaagagattcgacctgta
tgcaagaagttcatgcaagatcccatggaaatatatgtcgatgatgaggccaagttgact
cttcacggactcgtgcagcactacattaagttgagcgagcttgaaaagaatcgcaagtta
aatgacctcttggatgcgttggatttcaatcaagttgtgatctttgttaagagtgtgaac
agagctgctgagctcaacaaattgcttgtggagtgcaattttccttctatttgcatccat
tctgggatgtctcaagaagaaaggttgacccggtacaaaggctttaaggaggggcacaag
cggattcttgtggccactgatctggttggcagggggatagacattgagcgtgtgaatatt
gtgataaattatgacatgcccgaatctgcagacacatacttacacagggttggtcgtgct
ggtcggtttggtaccaaaggactagcaatcacatttgtcgcctctgcttctgattcagat
gtccttaatcaggttcaggaaaggtttgaggtggatataaaggagctgccagagcaaatc
gacacttcaacttacatgccatcgtaa
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