Amborella trichopoda: 18444217
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Entry
18444217 CDS
T02990
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18444217
Spliceosome [BR:
atr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
18444217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
18444217
NCBI-ProteinID:
XP_020529183
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
MVLSGRLFERGLAYVGTDYQSYPFWDKYIEYEFSQQEWSRLAMIYTRILENPINQLDRYF
NSFKELAGSRPLSELQTAEEAAITAASAEPGVQGGEEGEGPRDGVEQEFPKSTLSESEEL
EKYITIREDMYKKAKELDLQIRDFEAAIKRPYFHVKPLDDIQLANWHNYLDFIERGDDFN
KVVKLYERCLIACANYSEYWIRYVLCMEASGSMELASNALARATQVFVKRQPEIHVFAAR
FKEQSGDISGARAEYQLLHSDVAPGLIEALVKHANMEHRLGQVETALIIFTDAITSEQAK
DQSQILPFLYVQYARFLYLVVGNAEKAREVLTGALEHMPLSRPLVEAVIHLETVQPFPKR
IDYLDSLVEKVITPNAEDSNVLSSVDREELSSIFLEFVDLFGDATVIKKAENRHAKLFLH
QKTMSESRKRQAQDGLSSDKVKSLKSVSSAASPLLSAYPNGQQQWAAGYGPQPQAWAQAP
QPPVQQWNPAYSQQAGYGNYSYAGYTQPQQAAAAPQPAASYGAYTQTYPVQQAYTPQTYA
QATPAFTPAAAQPQAPVPQPYYSVGCIPQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggttttgtcgggaagactttttgaacgaggattggcatatgttggaacagactatcaa
tcctaccctttctgggacaagtacatagagtatgagttctcccaacaggagtggagccgt
cttgctatgatctacacaaggatattggagaaccccatcaaccaactagatcgctatttt
aacagcttcaaggagctggctggaagtcggcccctatctgagttacaaacagctgaggaa
gctgccataacagctgcaagtgctgagcctggtgttcaaggaggggaagaaggcgagggt
cctcgtgatggggtggagcaagagttccctaaatctacactcagtgaatctgaagaattg
gagaaatatattaccataagggaagatatgtacaagaaagctaaagagttggatttacaa
attcgcgactttgaggcagccattaagagaccatacttccatgtgaagcctcttgatgat
atacaactggccaattggcataactaccttgattttattgaaagaggggatgattttaac
aaggttgtcaagttatatgagagatgcctcattgcttgtgctaactattctgagtattgg
atacgctatgttctatgcatggaagccagtggaagtatggagcttgcaagcaatgcactt
gctcgggccacccaagtctttgtcaaaagacaacctgagattcacgtctttgctgctaga
tttaaagaacaaagtggggatatttcgggggcacgtgcagagtaccaactcttacattcg
gatgtggcacctggtctaattgaagctttagtaaagcatgcaaacatggagcatcgattg
ggtcaagtagaaactgcccttatcatcttcacggatgccataacttctgagcaagcaaaa
gatcagtcccaaattctacctttcctttatgttcagtatgcacggtttctttacttggtt
gttggcaatgcagagaaggctagggaggttttaactggagcccttgaacacatgccattg
tccaggccccttgttgaggcagttatccatttagaaacggttcagccttttccaaagaga
attgattacttggattcgcttgttgaaaaagtgataacacccaatgctgaggattctaat
gtgctgagttctgtggatagagaagaattatctagcatattcttggagtttgttgatctc
tttggagatgcaactgtgataaagaaggcggaaaacaggcacgctaagctatttttacat
caaaagactatgtcagaatcaagaaaaaggcaagcccaagatggtctttcatctgataaa
gtaaagtcactcaaaagtgtttcctctgctgcttctccacttctgtctgcctatcccaat
ggccagcagcaatgggcagctggttatgggccgcagcctcaagcttgggcacaggctcct
cagcccccagtgcaacaatggaatccagcctattcgcagcaggctggctatggaaattac
agttatgctggttatacccagcctcaacaagctgctgcagctccacaaccggctgctagt
tatggtgcctatactcaaacttaccctgtccagcaggcttatacaccacagacttatgcc
caagcgacgccggcctttacacctgctgctgctcagccacaagctccagttcctcagcct
tattacagcgtcggttgtatacctcagtga
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