Amborella trichopoda: 18444299
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Entry
18444299 CDS
T02990
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase FAM188A
KO
K22647
ubiquitin carboxyl-terminal hydrolase MINDY-3/4 [EC:
3.4.19.12
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atr04121
]
18444299
Enzymes [BR:
atr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
18444299
Ubiquitin system [BR:
atr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
MINDY
18444299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MINDY-3_4_CD
UIM
UIM_2
Motif
Other DBs
NCBI-GeneID:
18444299
NCBI-ProteinID:
XP_011627111
LinkDB
All DBs
Position
Unknown
AA seq
642 aa
AA seq
DB search
MADQEEDDLQMALRMSLQQAPDPKRSKPRESLASSPAVGSWEKPQMDGHPLENSQVAGKS
LEKSHVDGIYQEESPESRNRRVQRELMAAAAEKRMMVARNLKEEEVSVRRESVVPENPRI
ETVRKSDEGLALSNEDAHQLYYMVFGTSVSKDILAQWCNQGIRFSTDPETCMGLVQHEGG
PCGVLAAIQAFVLRNLLFYPDESSSYKSNMQHQHNFGLRRFLQIPHDRPDNVTSLSENEK
ARALVLSMVEILFLCGSKKQAAIATLNVLSNNSEEICKSDEKIAKALEGLSMESASDLQK
AVRIHPYTSQKAAVQRVKEMLPVFQSRMGAMLFLISALLSRGLEAIQSDRDDPGLPLVTA
PFGHASQEIVNLLLCGQAVPNVFDGSMDLGGGMSLKGIPTSVEVGFLTLLESLNFCKVGH
YLKCPKWPIWVIGSESHYTVLFALDVNVQEENKLEERESRIRKAFDSQDQSGGGGFISSE
AFQQVLRETNISIPPEKLEALCNSGFIVWNEFWQVLLQLDESSGGLKDSTGLMGRRQFDL
YHFNGIAKSVQNSGSLQGSGGEALQQRPRLSKIRVTVPPKWTPEEFMSDMVGPSSSSGSN
VCDGVAEVTQPDPPQHAPLVDCVRTWWPRAVCNWVGDPPSIV
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcaagaggaggatgaccttcaaatggctcttagaatgagccttcaacaagcc
cctgatcccaagaggagcaagccaagagagagcctcgcttcttctcccgccgttggatcg
tgggagaaaccacagatggacggccacccgctggagaactcacaggtggctgggaaatcg
ctggaaaagtcacacgtagacggaatttatcaggaagaatcgccagaaagtaggaatagg
agagtgcagagagagctaatggcggccgctgctgagaagaggatgatggtggcgaggaat
ttgaaggaggaggaggtctctgttagaagggagtcagttgtacctgaaaaccctagaatt
gaaactgttcggaaatcggatgaggggttggccttgtccaatgaagatgctcatcaactg
tattatatggtttttgggacttctgtttcaaaagatattcttgcgcaatggtgtaatcag
ggtatcaggtttagcactgaccctgaaacttgtatgggtctcgtgcaacatgaagggggc
ccatgcggtgtgcttgctgccatacaggcatttgtccttagaaacctgttgttttatcca
gatgagtcaagtagttacaaatccaacatgcaacatcaacacaattttggattgaggaga
ttcttacaaattccacatgatagaccagataacgttacttctctatcagaaaatgaaaag
gcaagagccttggttctcagtatggtggaaatattatttttatgtggaagcaaaaagcag
gctgctatagctacattaaatgtcctcagcaataattctgaagagatttgcaaaagcgat
gagaaaattgcgaaagctctggaaggtctctcaatggaatcggcttcagacttgcagaaa
gctgttaggatacacccatatacatcacaaaaagctgctgtgcaacgagtcaaggaaatg
cttcctgtttttcaaagtcgtatgggggcaatgcttttcctcatttcagctctactctca
agaggacttgaggctattcagtctgacagggatgatcctggactaccattggtgactgct
ccctttgggcatgcctcacaggaaattgttaacctattgctttgcgggcaagctgtgcca
aatgtgtttgatggtagcatggacctgggaggtggcatgtcccttaagggcataccgaca
agtgtagaagttgggttcctcactttgcttgagtctctcaacttctgtaaagttgggcat
tacctcaagtgcccgaagtggcccatctgggtaattggaagcgaatctcactacacagtc
ctctttgcccttgatgtcaatgtgcaagaggaaaacaaattggaggagagagaatcacgt
attagaaaagcctttgattcccaggaccaaagtgggggtggaggattcatcagctctgaa
gcatttcaacaggtcctcagagaaaccaacatctccattccaccggagaaactcgaagcc
ctctgcaactctggcttcattgtgtggaatgaattctggcaagtcttactacaacttgat
gagagctcaggtggcctcaaggactccacagggctcatgggaaggaggcaatttgatctc
taccatttcaatggaattgcaaagtcggttcaaaacagtgggtcactccaagggtcagga
ggtgaggctctgcaacaaagaccaaggctctcaaaaattagggtcactgtgcctccaaaa
tggactcctgaagagttcatgtctgatatggtggggccttcctcgagcagtgggtccaat
gtgtgtgatggagttgcagaggtgacccaacctgatcccccacagcatgcacccttggtt
gattgtgtgcgcacttggtggcctagagcagtttgcaactgggttggggatccaccaagt
attgtttga
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