Amborella trichopoda: 18444741
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Entry
18444741 CDS
T02990
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
atr
Amborella trichopoda
Pathway
atr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
18444741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atr03400
]
18444741
Enzymes [BR:
atr01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
18444741
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
18444741
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
18444741
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
18444741
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
18444741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DcpS_C
AAA_33
Macro
zf-C2HE
HIT
AAA_18
CPT
AAA_22
AAA_28
AAA
AAA_17
AAA_16
nSTAND3
NACHT
ATP_bind_1
Viral_helicase1
AAA_19
ABC_tran
AAA_24
Septin
AAA_30
MMR_HSR1
RNA_helicase
cobW
KAP_NTPase
Zeta_toxin
Sigma54_activ_2
AAA_14
VapE-like_dom
FtsK_SpoIIIE
Ploopntkinase3
SRP54
AAA_5
Motif
Other DBs
NCBI-GeneID:
18444741
NCBI-ProteinID:
XP_006854964
UniProt:
U5CT44
LinkDB
All DBs
Position
Unknown
AA seq
876 aa
AA seq
DB search
MGDGVEPSGVGNQLVVVLVGAPGSGKTTFCNNLMETSNRPWIRVCQDTIANGKAGTKAQC
LKKATEALKDGINVLIDRCNLEREQRDEFLKLYGPKVDVHAVVLDLPASLCISRSVKRTG
HEGGLQGGRAAAVVNRMLKYKDVPKLSEGFSRITFCQNEKDVENALSTYGSLGLSDSLLH
GCFGQRNAESKVQLGIMKFLKKAEAPINSQENATQKHSLTTDPEKPILLKGDENVDVTNN
KGFLRFVPSMDGVPQNRESVGKEVCHTSELDNPNSSVGNVNMDVTDNEGLLEYAPSMDDA
TQSKESGGKEICHTHELEEPISSVRDVDMSTINNKGLMEFASMDFVTQNDAFYTLVFPSI
STSDFQFNKEKASGIIVEEVSKFLDWAENVRLVLVDLTKTSTILSMVESKAVEKGIDPKK
FFTFVGDITRLCTDGGLQCNVIANAANWRLRPGGGGVNAAIFSAAGKEFEIATKESATSL
NPGEAIAVPLPHNSPLYKREGMTYVIHVLGPNMNPQRPNYLNNDYVEGCRVLCKTYSSLF
KCFASLIKTQKLQIRSSDLIKRETLESSNGTGKIPLDQFLQASNSHKQRAKRESCCETES
NKKCKGVPSSGFVLVNGGLHIKVPENSNHGRSHHTISGLSENIGSPSRSMAEENKEHKTS
KNDRVAKAWSSWAQTLHQIAMHPERHKNSVLESSDSNVVINDLYPKAQKHLLVLVRLDGL
DGLADVRKENLHLLRDMHSVGLKWVQNFWHDDASLVFRLGYHSAPSMRQLHLHVISQDFD
SPHLKNKKHWNSFNTIFFRDSGDVIEEVDKNGRAALYEAESILSMELRCHRCKSAHPNVP
CLKSHIRGCRAPFPASLINQGLLITTPMVARKEETG
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatggagtggaaccttcaggtgtcgggaatcagttggttgtggttctcgtgggc
gcaccaggcagtggcaaaacgaccttctgcaacaatctcatggaaacttcaaatcggcca
tggattcgtgtatgccaggacacaattgcaaatggaaaagcggggaccaaagcccaatgt
ctaaaaaaagcaactgaagccttaaaggatggcataaatgttcttattgatagatgcaat
ctagaaagagaacaaagagacgagtttttaaagctctatgggccaaaagttgatgtgcat
gctgtggttcttgatctgccagcgtcactttgcatttcaagatcagtgaagcgtaccgga
catgaaggaggcttacaaggaggaagggcagcagctgttgttaatcgtatgctaaaatat
aaagatgtgccaaagctcagtgaagggttctctcgaattacattttgccaaaatgaaaag
gatgttgagaatgcactaagtacatatggatcattgggactgtctgacagtcttttgcat
gggtgttttggacaaagaaatgcagagtctaaagttcaacttggcattatgaagttccta
aagaaagcagaggccccaataaatagtcaagaaaatgctacacaaaaacattctcttact
actgacccagagaagccaattttgttaaagggtgatgagaatgtggatgttactaataac
aaaggatttttgagatttgtgccttccatggatggtgttccacaaaatcgagaaagtgtt
gggaaggaagtttgtcatactagtgaacttgataatccaaattcatcagtgggaaatgtg
aatatggatgttactgataacgaaggcttgttggaatatgctccttccatggatgatgct
actcaaagtaaagaaagtggtggaaaagaaatttgtcatacccatgaacttgaggagccc
atttcatctgtgagagatgtagacatgagcaccatcaataacaaaggcttgatggaattt
gcttctatggattttgttacccaaaatgatgctttctatactctagttttcccatcaatt
tcaacatctgattttcaatttaacaaagaaaaggcatctggtataattgtagaagaagtc
tctaagttcttggattgggcagaaaacgtgagactagttcttgtagacttgacaaaaaca
tccactatattgtcgatggttgagtccaaagcagtggagaaaggaattgatccaaagaag
ttcttcacatttgtcggggacataactcgactctgcactgatggaggtttgcagtgcaat
gtgattgccaatgctgccaattggcgcttgaggcctggaggaggtggtgttaatgcggct
atattcagtgcagcgggtaaagaatttgagattgcaacaaaggaaagtgctactagtctc
aaccctggtgaagccattgctgttcctctcccccacaattctcctctatacaaaagagag
ggcatgacttacgtgatacatgttcttggcccgaatatgaacccacaaagaccaaactac
cttaacaatgattatgtagaaggatgcagagttctttgtaagacttactcatcacttttt
aagtgttttgcttctttaataaagacccaaaaattgcaaattcgcagcagcgatcttatc
aagcgagaaactttagaatcttcaaatggcactggaaagattcctcttgatcagtttctt
caggcctctaacagtcataaacagagagctaagagggagagctgttgtgaaactgagagt
aataaaaaatgcaagggagttccttcttctggatttgttttggtgaacggtggtttacat
attaaggttcctgaaaatagtaaccatggtaggagtcatcacaccatatctggattaagt
gagaatattggaagcccatccagatccatggcagaggaaaacaaggagcataagactagt
aagaatgatagggttgcaaaggcttggagctcatgggcacagactctgcaccagattgcc
atgcacccagaaaggcacaagaatagtgttttagagagttcagactcgaatgttgtaata
aatgacctttatcctaaggcccaaaagcacttgttggtacttgtgagacttgatggacta
gatggccttgcagatgttcgtaaagaaaaccttcatttgttgagggatatgcactctgtg
ggacttaagtgggtccaaaatttttggcatgatgatgcatctttggtttttcgtcttggt
tatcactcggctccttcaatgcggcagcttcaccttcatgttattagccaagattttgat
tcccctcacctgaaaaacaagaaacattggaattcattcaacacgatcttctttagggat
tccggtgatgtgattgaagaggtcgataagaatggaagggcagcattgtatgaggctgag
agcatcttatcaatggaattgcgttgccaccgttgcaagagtgctcaccctaatgtccct
tgcctcaaatctcacattcggggatgtcgtgctccttttcctgcatcccttattaatcag
ggccttttgatcacaaccccaatggtggcaagaaaggaagaaacaggataa
DBGET
integrated database retrieval system
