KEGG   Amborella trichopoda: 18444985
Entry
18444985          CDS       T02990                                 
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
atr  Amborella trichopoda
Pathway
atr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18444985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atr03019]
    18444985
Messenger RNA biogenesis [BR:atr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     18444985
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     18444985
SSDB
Motif
Pfam: EXOSC1 RRP4_S1
Other DBs
NCBI-GeneID: 18444985
NCBI-ProteinID: XP_011627339
LinkDB
Position
Unknown
AA seq 220 aa
MHVSNDVKMFEKVKIEGGPVMHGQQMNKNLFAVSTCDVRNNVTDQVIDEVTRNSVRDGSV
SDVEQQQLLPMTLGDATKSESHKPTIEVVRHKAHGSVPQPGSIVIAWVTKVMARMASADI
MCVGSKSVREKFTGMIRQQDVRATEIDKVDMHLSFRPGDIVRAMLSLGDARAYYLSTAKN
ELGVVSAQSAAGATMIPISWIEMQCPQTGQIEQRKVAKVK
NT seq 663 nt   +upstreamnt  +downstreamnt
atgcatgtttcaaatgatgtcaaaatgttcgagaaggtgaagattgaaggtggcccagtc
atgcatggacaacaaatgaacaagaatttgtttgcagtgtcaacatgtgacgtccgaaat
aacgttactgatcaagtaatcgatgaagtcacaagaaacagtgttcgtgatggctctgtg
agtgatgttgagcagcagcagttgttacccatgacgttgggtgatgctacgaaaagtgag
tcgcataaacccaccatcgaagttgtgcgtcacaaggcccatggatcggttcctcaacct
ggttccattgtcattgcctgggtaacgaaggtgatggctagaatggcttcagctgatatc
atgtgtgttggatcaaagtctgttagagaaaaatttaccggaatgatcaggcagcaagat
gtccgagcaacagagatagataaagttgacatgcacttgtcttttcgtcctggggacatc
gttagagcaatgctatctcttggggatgcaagggcttattatctttcaactgcaaagaat
gaactgggagtcgtatctgcacaaagtgccgcaggtgcaactatgatacctatcagttgg
atagagatgcaatgccctcagacaggccaaatcgaacaaagaaaagttgcaaaagttaaa
tga

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