Amborella trichopoda: 18446393
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Entry
18446393 CDS
T02990
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
18446393
Enzymes [BR:
atr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
18446393
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
18446393
NCBI-ProteinID:
XP_020530602
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All DBs
Position
Unknown
AA seq
643 aa
AA seq
DB search
MSIFGVKLLTEDHYVVLDNGIVNLTLSKPEGIVTGIQYGGIDNVLETLNEEVNRGYWDLV
WGDLGESRHGTFDVIKGTKFNVVVENDEQVEVSFTRVWDPSLKGTLVPLSIDKRFILLRG
CSGFYTYAIYEHLEGWPAFYLSQTRIVFKLRKDKFQYMAIADNRQRIMPMPDDRLPPRGQ
PLAYPEAVLLVDPINPDLKGEVDDKYQYSCDNKDIGPHGWICTDPLVGFWNITPSNEFRT
GGPLKQNLTSHVGPITLAMFQSAHYAGDNLVPKFQNEEPWKKVFGPVFIYLNSALTGQDC
SVLWEDAKEQMMTEVQSWPYSFLASADYPTKEERSSVSGRLLVRDRFLSNDDLIADSTYV
GLALPGDIGSWQRECQGYQFWTRTDYDGYFTISSVRVGDYNLYAWVYGFIGDYKYDGKIT
ISSGCDVDLGEIVFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYVNKLYVDHPDRFRQY
GLWERYTDLYPNDDLVYTVGTSDYQKDWFFAQVTRKGENGTYQATTWQIKFDLDSVNQDG
TYKLRVALASAAMAELQVRFNDPKANPPHFTTGIIGMDNAIARHGIHGLYWLYSIDIPNT
QLVVGVNTIFLTQANSTSPFRGILYDYIRLEGPPSEELPHHSH
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatatttggagtaaaactactcacggaagaccactatgtggtgttggacaatggc
atcgtgaacttaacattgtctaagcccgaaggtattgtaacaggcattcaatatggaggc
atcgataatgtacttgaaactctcaatgaagaagtcaatcgtgggtattgggatctcgtt
tggggtgatcttggagaatccagacatggaacattcgatgtgataaagggtacaaagttc
aatgtagtagtagagaatgatgagcaagtagaagtctcctttacaagggtatgggatccc
tctctaaagggtactcttgtaccgttgagcatagataagagatttattttgcttcggggt
tgctccggattctacacatacgcaatttatgagcatttggaggggtggccagctttctac
ctcagccagactcggattgtattcaagcttagaaaagacaagttccagtacatggctatt
gcagataacagacaaagaatcatgccaatgcctgatgaccgtttgcctcctaggggccaa
ccactagcatatccagaagcagtccttcttgtagatccaattaacccagatctcaagggg
gaggttgatgacaagtaccaatattcatgtgacaacaaggacattgggccacatggttgg
atatgcactgatcctttggtgggcttttggaatattactccttctaatgaattcagaact
ggaggaccactcaaacaaaacctcacttcccatgtgggtcccatcactctagctatgttt
cagagtgctcactacgctggggacaatcttgtgcccaagtttcaaaacgaggaaccatgg
aaaaaggtttttggacctgtattcatatatcttaattcagctttaacagggcaagattgc
agtgtactctgggaagatgcaaaagaacagatgatgactgaagttcagagctggccttat
agttttctagcttcagcggactaccccactaaggaagagagaagttcagttagtggtcga
ttactcgttagagacagatttctcagcaatgatgatttgattgcggattctacttacgtt
gggctggctttgcctggagatattggctcatggcaaagagaatgccagggatatcaattc
tggaccagaactgattatgatggttatttcaccattagtagtgttcgggttggagattac
aatctgtatgcatgggtgtatggtttcattggagactacaaatatgatggaaagattacc
atatcttcaggatgtgacgtagatttgggtgaaattgtttttgagcctccaagagatggc
ccaactttgtgggagattggtattcctgatcgatctgcagctgaattctatgttcctgat
cctaatcctaaatatgtcaacaaactttatgttgaccatccagacaggttcaggcagtat
gggttatgggaaagatatactgacttgtatccaaatgacgatcttgtctatactgttggc
acaagcgactatcagaaagattggtttttcgcacaagtaacgaggaagggagaaaatggc
acatatcaagctacaacatggcagataaagttcgaccttgatagtgtaaaccaagatggt
acctataagctccgagtggccctcgcatcagctgcaatggctgaactacaggttcgattc
aatgatcccaaagccaatccaccacattttacaactggaataattgggatggataatgca
atcgctaggcatgggattcatgggctctattggttgtatagtattgatataccaaacact
cagcttgtggtgggggtaaatacgatctttctcactcaagctaatagcacaagtcctttc
cgaggtattctttatgattatattcggctagaagggcctccctccgaagaactccctcac
cattctcattga
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