Amborella trichopoda: 18446395
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Entry
18446395 CDS
T02990
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X2
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
18446395
Enzymes [BR:
atr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
18446395
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
18446395
NCBI-ProteinID:
XP_011627872
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Position
Unknown
AA seq
643 aa
AA seq
DB search
MSAFGVKLLRQGRHVVLDNGIVQVTLSKPEGIVTGIQYGGIDNVLETLNEEVNRGYWDLV
WGDPGLSGPGTFDVIKGTKFCVVVENDDQVEVSFTRAWDPSLKGNFVPLNIDKRFILLRG
CSGFYTYAIYEHLEGWPDFYLSETRVAFKLRKDKFQYMAIADNRQRIMPMPDDRLPPRGQ
KLAYPEAVLLVNPINPDLKGEVDDKYQYSCDNKDIGAHGWICTDPLVGFWEITPTNEFRT
GGPLKQNLTSHVGPTTLAMFQSGHYAGDDLVPKFRNGEPWKKVFGPVFIYLNSALTGLDC
SVLWEDAKEQMMTEVQSWPYSFPASMDYPTEEERGSVSGRLLVRDRFVSGDDLIANCAYV
GLALPGDAGSWQRECKGYQFWTKTDFEGCFTITSVRIGDYNLYAWVYGFIGDYKYDAKIT
ISSGCDIDLGEIVFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYVNKLYVDHPDRFRQY
GLWERYGDLYPNEDLVYTVGASDYRKDWFFAQVTRKGENGTYQATTWQIKFNLDSVNKDG
TYKLRVALASAAIAELQVRFNDPKANRPHFTTGRIGMDNAIARHGIHGLYWLYSIDIPNT
QLVVGVNTIFLTQPRCTSPFQAILYDYIRLEGPPSEVLPHHSQ
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcttttggagtaaagctacttaggcaaggccgccatgtggtgttggacaatgga
atcgtgcaagtaacattgtctaagcctgaaggcattgtgacaggcattcaatatggaggc
atcgataatgtacttgaaactcttaatgaggaagtcaatcgcgggtattgggatcttgtt
tggggtgatcctggattatctggacctggaacatttgacgtgataaagggcacaaagttc
tgtgtggtagtagagaatgatgaccaagtagaagtctcctttacaagggcatgggatcct
tctctaaagggaaattttgtaccattgaacatagataagaggtttattttgcttcggggt
tgctctggattctacacctacgcaatttatgagcatttggaggggtggccagatttctat
ctcagtgagactcgggttgcattcaagcttagaaaagacaagttccagtacatggctatt
gcagataacagacaaagaatcatgcctatgcctgatgaccgtttgcctccaaggggccaa
aaactagcatacccagaagcggtcctccttgtaaatccaattaacccagatctcaaggga
gaggttgatgacaagtaccaatattcatgtgataacaaggacattggggcgcatggttgg
atatgcactgatcctttagtgggtttttgggagataactccgactaatgaattcagaact
ggaggaccacttaaacaaaatctcacctctcatgtgggtcccaccactctagctatgttt
cagagtggtcactatgctggggacgatctcgtacccaagtttcgaaatggggagccatgg
aagaaggtttttggacctgtattcatatatctcaattcggcgttaacagggctagattgt
agtgtactatgggaagatgcaaaggaacagatgatgaccgaagttcagagctggccttat
agttttccagcttcaatggactacccgaccgaagaagagagaggttcagttagtggccgc
ttactcgttagagacagatttgtcagcggtgatgacctgattgcgaattgtgcttatgtt
gggctggctttgcctggagatgctggctcatggcaaagagaatgcaagggatatcaattc
tggaccaaaactgattttgaaggttgtttcaccattactagtgttcggattggagattac
aatctgtatgcatgggtgtatggtttcattggagactacaaatatgatgccaagattacc
atatcttcaggatgtgacatagatttgggtgaaattgtttttgagcctccaagagatggc
ccaactttgtgggagattggtattcctgaccgatctgcagctgagttctatgttcctgat
cctaatcctaaatatgtcaacaaactttatgttgatcatccagacaggttcaggcagtat
gggttgtgggaaagatatggtgacttgtatccgaatgaggatcttgtctacactgttggc
gcaagcgactatcggaaagattggtttttcgcacaagttaccaggaagggagaaaatggc
acatatcaagctacgacatggcagataaagttcaaccttgacagtgtaaacaaagatggt
acctataagcttcgagtggcccttgcatcagctgcaatagccgaactacaggttcgattc
aatgatcccaaagccaatcgaccacattttacaactggaagaattggaatggataatgcg
attgctaggcatgggattcatgggctctactggttgtacagtattgatataccaaacact
cagcttgtggtcggggtaaatacaatctttctcactcaaccaagatgcacaagtcctttt
caagctattctttatgattatattcggctagaagggcctccctcagaagtgctccctcac
cattctcaatga
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