Amborella trichopoda: 18447034
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Entry
18447034 CDS
T02990
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
atr
Amborella trichopoda
Pathway
atr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18447034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18447034
03036 Chromosome and associated proteins [BR:
atr03036
]
18447034
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
18447034
Coactivators
SAGA/TFTC/STAGA complex
18447034
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
18447034
STAGA complex
18447034
TFTC complex
18447034
SAGA complex
18447034
SLIK complex
18447034
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_HPS5
Ge1_WD40
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_Nup120_160
LisH
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_DCAF12
Beta-prop_NWD2_C
RAB3GAP2_N
Beta-prop_VPS8
PROPPIN
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
18447034
NCBI-ProteinID:
XP_020530853
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MDDEEIHRAVMTYLKKKGFKQTELAFQEEQRKDLSSVETDPDIARQIISFAESENGPAKY
KEDYSKLRSWTYSSLDLYRHELLRVLYPVFVHCFMDLVAKGHGQEARNFFLAYREDHELL
YLRDLQKLEGIILPSHLEEMEFARSLRQSKVNIKLCQYSYELLLQYLHKSESMKMLGIIN
EHINFEVSSGQSSSISDDAEAVTMIGSTQDAAKELNQKEIRWGLLEDSLEERLEKENMAS
EAEKVDGDGKDADMDDNKKKAEGGKSGVSLKKVKKDKLLGATGKNIRTETSTVSVAPRVK
SELPLPVVPMEVEHSFLEDLRNRAQLGSSALPSVSFYTFINTHNSLNCASISRDGSLVAG
GFSDSSVKVWDMSKIGQQSENGNVQGEIEAAQKGQVLGQENGKRSYTLLQGHSGPVYSTT
FCPLGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPIWDVQFSPVGHYFASSSHDRTAR
IWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECVRIFLGHRG
MILSIAMSPDGRYMASGDEDGMIMMWDLSSGKCVTPLTGHTSCVWTVAFSCEGSLLASGS
ADCTVKLWDVNANTKGPRAEEKVTNTNRLRFLKTLPTKSTPVYALQFSRRNLLFAAGALS
KGLSSYNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgaagagatacatagggcggtcatgacgtatttgaagaagaagggtttcaag
caaactgagctcgcatttcaagaggagcagagaaaagatctctcttctgtggagactgat
cctgacattgctcgccaaatcatttcttttgcagaatcagagaatggcccagctaaatac
aaggaggattatagcaagctaagatcttggacctatagctcattagatttataccggcat
gagttactccgtgtactctatccagtttttgtccactgttttatggatcttgttgcaaag
ggacatggccaggaagctcgaaattttttccttgcctaccgcgaagatcatgagctgttg
tacctccgagacctccaaaagttggaaggaattatcttaccctcgcatttggaggagatg
gaatttgctcgatcgttgaggcagagtaaagtcaacattaagctatgtcagtattcatat
gagctgttgctgcaatatctgcacaaatcagagtctatgaaaatgcttgggattatcaat
gagcatatcaatttcgaagtttcttctggacagtccagctcgatttcagatgatgcagag
gccgtcacaatgattggaagcactcaggatgctgcgaaagagttaaatcaaaaggaaata
cgttggggattgcttgaagactctttagaagaacgattggagaaagagaatatggcttca
gaagctgaaaaagttgatggtgatggcaaagatgcagacatggatgataataagaagaag
gcagagggtggaaaatctggagtttctcttaagaaggtgaaaaaggacaagcttttgggg
gcaacaggaaagaatatacgtacagagacaagcactgtttctgtagctcctcgagtgaaa
tctgaacttccattaccggtggttccaatggaagttgagcactcatttctagaggacctg
cgaaaccgagcgcagctgggaagctcagcactgccatcagttagtttctatacttttata
aatacccataatagtctaaattgtgcgtcaatttctcgtgatggttccttagtggcaggt
ggattctctgactcatcagtgaaggtctgggacatgtcaaagatagggcagcaatcagaa
aatggcaatgtgcagggagaaattgaagctgctcagaaggggcaagtcttaggacaggag
aatgggaaaaggtcttacacattacttcagggtcactctggacctgtttattcaacaacc
ttttgtccactgggggattttatcctgtcttcttctgctgattcaactattcgattatgg
agcactaaactgaatgctaatcttgtctgctataagggtcacaattatccaatctgggat
gttcagtttagtcctgttggacactattttgcaagttcttcacatgatcggactgcgaga
atatggtctatggatagaatacagcctctacgcataatggcaggacacctgtcggatgtg
gattgtgtgcaatggcatgtaaactgcaattacattgcaactggttctagcgacaagaca
gtcagactgtgggatgtgcagactggagaatgtgttcgcatttttcttggtcatagaggt
atgatattgtccatagcaatgtcacctgatgggcgttatatggcttctggtgatgaggat
ggcatgataatgatgtgggatctttcaagtggaaaatgtgtcactcctttaacagggcat
acgtcttgtgtatggactgttgcattcagttgtgaaggttcattattggcatctggttct
gctgattgcactgtaaaactatgggatgtcaatgctaatacaaagggtccacgagcagaa
gaaaaggtaactaacacaaatagactgcgatttttgaagactctgcctactaagtcaact
cctgtctatgctttacagttctctagaaggaatcttctgtttgcagctggagcactctca
aaaggcttgagttcttacaacaagtag
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integrated database retrieval system
