Amborella trichopoda: 18447293
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Entry
18447293 CDS
T02990
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
atr
Amborella trichopoda
Pathway
atr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
18447293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18447293
04121 Ubiquitin system [BR:
atr04121
]
18447293
03036 Chromosome and associated proteins [BR:
atr03036
]
18447293
03400 DNA repair and recombination proteins [BR:
atr03400
]
18447293
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
18447293
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
18447293
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
18447293
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
18447293
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-RING_6
zf-HC5HC2H_2
BRCT_2
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_2
RTT107_BRCT_5
zf-C3HC4
zf-RING_5
zf-C3HC4_3
PTCB-BRCT
DUF6935
Gag_p24_C
Motif
Other DBs
NCBI-GeneID:
18447293
NCBI-ProteinID:
XP_006857456
LinkDB
All DBs
Position
Unknown
AA seq
804 aa
AA seq
DB search
MADQSLSETFLNPCILHLQKMGLEFKCPICLKLLNHAVSLSCDHIFCSSCISIAVLPRLE
CPVCRLPYHSQDLRVAPHMDSLVSLYKNIEAVAGIRLLGADSQQCHSDLKKPEKCCSEMG
NASIGVSSKTKFKRWYGSDENSLAEKSTGPVFPAKKRLQASQFPGVELSAPSRPENSYNM
KIDHAKDEVEGRSRGLVKVGAEKGNNNFDALQLNKDEVSPDVLQSEWSRSFDHAHDPSNS
PLSSVTKNLKDERFNLGKENSPQQPSDIKKKHYEEMPGVLFHEEHHGKSKSNHKYHAKEK
NRKEIKKQKKLKSRFDNNDHCQENQMVDSVCRMTTNENTLKSKSESESDSLNGTSNSSAE
ARNPSKEMSPQVSGYVEYLDGKSTVSDASPKEGRMLVFEACDNENLVATKRVVCAFCQFP
EDSEASGQMLHYINGKPVGDDYKTQSNSLHVHKKCAEWAPKVYFVGDIAINLESEVARGA
KMKCNICGLKGAALGCYAKSCRRTFHVPCAVQAPEFRWDCENFVMLCAVHSSFRLPNEVA
VTGRHRKLHHSSGVLEDTRCSPGSSINNRSKNWTDSHAIGSKWVLCGSALNAEEKDFVAR
FAKLSGAIMSKAWSPDVTHVIASTNGNGACKRTLKFLMAILEGRWILNINWIKGCLKAMS
PVSEEPYEIKFDINGSHEGPKNGRLRIMQKVPKLLEGLTVYFSGEFEDSYKGYLEDLVLA
AGGTILDTKPDSIALCEQITENPSTIIIYSCEPPPKCKPSQVSSVIDNRFSQAKTLAAQT
GANVCGHIWLLDTIAACRLQPFEC
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccagtctctttctgaaacctttctcaacccatgtattttgcatttacagaag
atgggcctcgagtttaaatgtcccatttgcttaaagctgttgaaccatgctgtgtctctc
tcatgtgatcatatcttttgtagttcttgcatttcaatagcagtattgcctcggttggag
tgtcctgtttgtagattaccctatcattctcaagatttgcgggttgcccctcatatggat
agcttggtgagtttatacaaaaacatagaggctgtagctggcatcagacttttgggggct
gactcccagcagtgccattcagatttgaagaaaccagaaaaatgttgctctgaaatgggg
aatgctagtattggtgtttcttctaaaacgaaatttaagagatggtatggaagcgatgaa
aattcattagctgagaaatcaactggtcctgtattccctgctaagaaaaggcttcaagct
tcacagtttccaggagtagaactcagtgctccttcaaggccagaaaattcttataatatg
aaaattgatcatgctaaagacgaggttgaaggcagatcacgtggacttgttaaagttgga
gctgaaaaagggaataacaattttgatgctttacagttaaataaagatgaagttagccct
gatgttttgcaatctgagtggtcaagaagttttgaccacgcacatgacccatcaaattct
ccactgtcaagtgttaccaagaatttgaaggatgagagatttaatctgggaaaggaaaat
agtcctcagcaaccatcagatatcaagaagaaacactacgaggaaatgcctggagtgctt
ttccatgaggaacatcatgggaaatcgaagagtaaccacaaatatcatgcaaaggagaaa
aaccgaaaagaaataaagaaacagaagaaattgaaatccaggtttgacaataatgatcac
tgccaagagaatcaaatggtagattcagtctgtagaatgacgacaaatgaaaatacactg
aaatccaaatctgagtctgaatctgacagcctcaatggaacttccaactcttcagctgaa
gccagaaacccaagcaaggaaatgagtcctcaagtttcaggatatgtggagtatcttgat
ggaaaatccacagttagtgatgctagcccaaaggagggaaggatgttggtttttgaagcc
tgtgacaatgaaaatttagttgctacaaagagagttgtatgtgcattttgccagtttcca
gaggactcagaggcttcagggcagatgttacattacatcaacggtaaaccagtgggagat
gattacaagacccaatctaattccttgcatgttcacaagaaatgtgctgagtgggctcca
aaggtttattttgtgggtgatattgctattaatctagaatcagaagtagcaagaggtgca
aagatgaaatgcaatatttgtgggctcaagggggcagcactcgggtgttatgctaagagc
tgccgtaggactttccatgttccctgtgcagtgcaagctcctgaatttcgctgggattgt
gaaaattttgttatgctttgtgctgtgcactcatccttccgtttaccaaatgaagtggct
gtgactggaaggcatagaaagctacatcattcatcaggggttcttgaagacacaaggtgt
tcacctggttcatcgattaacaatcggagcaaaaattggacagattcgcatgccataggt
agcaaatgggtgttgtgcggctctgctctcaatgctgaagagaaggatttcgttgcaagg
tttgcaaaattgagtggtgcaattatgtctaaggcttggagcccagatgtgactcatgtc
attgcttccactaatggcaatggtgcttgcaaaagaaccctcaaattcctgatggccatc
ttggaaggaagatggatactgaacattaactggatcaaaggatgcttgaaagccatgtct
cctgtgagtgaagaaccttatgaaattaagtttgatatcaatggttctcatgaggggccc
aaaaatggccgccttagaatcatgcaaaaggtgcccaagctactcgaaggcttgactgtt
tatttcagtggtgagtttgaagactcttacaagggatacttggaagatctagttttagca
gctgggggcacaatattagacacaaaacctgattctatcgcactctgtgaacaaataact
gaaaatccatctaccatcattatatacagttgtgagcctcctccaaagtgcaaacctagt
caggtttcttcagttatagacaacaggttcagtcaagccaagaccttggcagcacaaact
ggtgccaatgtctgcggtcacatctggctcttggacactatagcagcttgtagactgcaa
ccttttgagtgctaa
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