KEGG   Amborella trichopoda: 18447443
Entry
18447443          CDS       T02990                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
atr  Amborella trichopoda
Pathway
atr03013  Nucleocytoplasmic transport
atr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18447443
  09122 Translation
   03013 Nucleocytoplasmic transport
    18447443
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atr03019]
    18447443
   03041 Spliceosome [BR:atr03041]
    18447443
Messenger RNA biogenesis [BR:atr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     18447443
Spliceosome [BR:atr03041]
 Complex C
  Other components
   EJC/TREX
    18447443
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    18447443
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_NOL10_N Beta-prop_Aladin Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 DSE1_N Beta-prop_WDR75_1st eIF2A Beta-prop_EML Beta-prop_WDR35_TULP_N NBCH_WD40 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_DCAF12 Tricorn_2nd TRM82_WD CFAP251_N WDR90_beta-prop_4th Beta-prop_NUP159_NUP214 PAC11 Beta-prop_WDR41 Beta-prop_WDR11_1st Beta-prop_ACSF4 Beta-prop_IFT80_2nd Beta-prop_Nup120_160 WD_LRWD1 TP_0598_N DUF1367 DUF7099 Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 18447443
NCBI-ProteinID: XP_006857602
UniProt: U5D9B9
LinkDB
Position
Unknown
AA seq 315 aa
MEETQSISFKNLHSREYQGHKKKVHSVAWNFTGTKLASGSVDQTARVWHIEPHGHGKVKD
LELKGHTDSVDQLCWDPKHADLVATASGDKTVRLWDARSGKCSQQVELSGENINITYKPD
GTHIAVGNRDDELTILDVRKFKPILKRKFNYEVNEIAWNTTGEIFFLTTGNGTLEVLAYP
SLKALHTLNAHTAGCYCIAIDPTGRFFAVGSADALVSLWDLSEMLCVRTFTKLEWPVRTV
SFNHTGQYIASASEDLFIDISDVHSGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY
QQDEGVFRIFGFESA
NT seq 948 nt   +upstreamnt  +downstreamnt
atggaagaaacgcagtctatttctttcaagaatcttcatagtagagagtaccagggccac
aaaaagaaggttcattcagttgcctggaattttacaggaactaagcttgcttcaggttca
gtggatcaaactgcccgtgtttggcatatcgagcctcacggccatggaaaagtcaaggat
ctggaactgaaagggcatactgatagtgttgatcagctatgctgggatccaaagcatgct
gatttagtcgcaactgcatcaggagataagactgttcgcctttgggatgctcgtagtgga
aaatgctctcaacaagtagaacttagtggtgaaaacatcaatatcacgtataaacctgat
ggcactcacattgctgtgggaaatagggatgatgaattgacaatattggacgttcgcaag
tttaaaccaattctcaagcggaagtttaattatgaggtgaatgagatagcttggaacacc
actggagagatattctttcttacaactggaaatggtactcttgaggtactggcatatcca
tctcttaaagcacttcacacacttaatgctcatacggcaggttgctattgcatcgcaatt
gatcccacaggaagattctttgctgttggaagtgctgatgcactggttagcctttgggac
ctctcagagatgctctgtgtccgtacgtttacgaaacttgaatggccagtcagaacggtg
agtttcaatcacacgggacaatacattgcctcagccagtgaagatttgttcattgacatt
tccgatgttcacagtggaagaacagtccatcaaattccttgcagagccgccatgaacagt
gtagaatggaacccaaagtacaacctcctggcatatgctggtgatgacaagaacaaatac
cagcaagatgaaggtgtcttcagaatatttggtttcgagagtgcttga

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