Amborella trichopoda: 18447475
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Entry
18447475 CDS
T02990
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18447475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18447475
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18447475
mRNA degradation factors
5'-3' decay
Decapping complex
18447475
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_C
Urb2
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
18447475
NCBI-ProteinID:
XP_006857634
UniProt:
U5D0I5
LinkDB
All DBs
Position
Unknown
AA seq
1407 aa
AA seq
DB search
MASAGNPNQTGGFDVQKLFKPGNPSNMNPNQPSGYNPPPSAPFPPPFSSPQVPNLPNLQS
GPFSYPPQSTPFHPYLHYPQDQIPSSQPIRTPNFQNTPPFTSSPLPPIHPNFTQPQSGPN
PGARLMALLSTHSSGEPLGPTNLELPHGPISSGDSNFNQTTASPQIGSNISSPPPAQFPA
IPTAPPVSLAPPPNAQPSRMSSSKLPKGRHIRGDHVVYDVDDRRPGEVQPQLEVNPITKY
ASDPGLVVGRQIAVNKTYICYGLKLGAIRVLNINTAIRSLLRGHSQRVTDMAFFAEDVHL
LASASVDGRVFIWKIIEGPDEENKPQITADIILAMQIVVDGESSHPRICWHSHKQEVLVV
GIGKHVFKIDTTKVAKGDGFVAEDPIKCHVTKPIDGVQCIGTHDGEVTDLSMCQWMATRL
VSASTDGTVKIWADKKSLPLATLRPHDGQPVGSVAFLTSPHRPDHIVLLTAGALNRELKL
WASAGPEGWLLPSDAEQWQCMQTLDLWSSSQPQPEEAFFNQVVALPRVGLILLANAKKNA
IYAVHIEFGSSPSGTRMDYVAEFTVTMPILSFTGTTNGLQIGDLGIIQVYCVQTQAIQQY
ALDLSQCLPPPLEHLGSDAVSGLCSAFEAANTSSTYSAPDPSPEMGGMPRPRSPLPVSSS
ESAPMAKGPVYPSPIEVLKSHELGTSSSEVKLSGLASVSSGSELGNIPVPPPPLSPRLSG
RLSGFRSPRTKSFEEGAGGDQLVHEYSVERRVEALPNAPSDDGSVKEERKSTHTENSVVP
SAPMLFEKSENMITSSESLTMKISSSDSSLVTQDLRGGELQVQDVTVNAEANNEEVEVKV
VGESGQDQVEERGTLAPFSEKTEKCFLSQASDISCETARECFSSTEIFSLEEPRQVEEVG
VVEEREQSSSAQVEERQGTPKDIAIKMNETSPNVNATQSPLSAGKGKKQKAKPSQSTAPS
PFNSTDSLSGDPGCSSAVPSTEAVSSQILAMQETLNQLVTMQKEMQKQMTAMISVPVAKE
GKKIEAAIGRSMEKLVKANMDALWARFQEENAKHEKAERERAQQITSLITNFTNKEVPAM
LERTKKELATMGPTVGQAITPVIGKMVSSAIAESFQKALGDKAMNQLEKTIGSRLESSVS
RQIQSQLQTSVKQAIQDALRSSMESSMIPAFEASCRAMFEQIDTAFLKGMTEHTTAALQQ
FESTHSSLAMTLRDSVASASSITQTLSAELADGQRKILALAANQNLGNPLAKQQSNGSLA
AFHEMEAPVDPTKELSRLIAEHKFDEAFTKALQRNDIALISWLCSQVDLPALLSTVPLPL
SQGIILALVQRLTYDLGPDSPRKLTWIREAALVLNPTDPIINAHVRGILEQVYQMLMHHM
SLATSSSDSSNLRVVMHIINSLLSTCK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggctggaaacccaaatcaaacaggaggctttgatgttcaaaaacttttcaaa
ccaggaaacccgtcaaatatgaaccctaatcaaccctctggttataacccaccgccttca
gctccatttccacctccttttagctctccccaggtcccaaacctcccaaatttacagtct
ggtcctttctcttacccaccccaaagcaccccattccacccttacttgcattatccccaa
gatcagattccaagctctcaaccaattagaactccaaattttcagaatactccacctttt
acaagctcccctttgcccccaattcacccaaacttcactcaaccccagtctggccctaac
ccaggtgctagattaatggcacttttgagtacccactcatcaggtgagcctcttggtccc
acaaatttggagttaccccatggcccaatatcctctggtgatagcaatttcaatcaaact
actgcttctcctcaaataggttcgaacatttcaagtcctccacctgctcaatttcccgca
attcccactgctcctcctgttagtttagcccctcctccaaatgcccaacctagtagaatg
tctagtagtaagcttcctaaaggcagacatataagaggggatcatgttgtgtatgatgtc
gatgatagaaggcctggagaggttcaacctcaacttgaggtgaatccgataacaaagtat
gcttcggatccggggcttgttgttggtcgacaaatcgcagtcaataagacttacatatgc
tatggtttgaagttgggggcgattcgggttttgaatatcaacactgcaataagatcgttg
cttcgtgggcattctcagagggtcactgatatggctttcttcgcagaggatgtgcatttg
ttggcaagtgcaagtgtggacggcagagtattcatttggaagataattgaaggcccagac
gaggagaataagccacagattacagctgacattatcctagccatgcagatagtggtagat
ggcgaatcatctcatccacgcatatgttggcactcacacaagcaagaagttctggtggtt
ggcattgggaaacatgtttttaagatcgatacgaccaaggtggcaaaaggagatggtttt
gttgctgaggaccctatcaagtgccatgttaccaagcctatagatggagttcaatgtatt
ggtacacatgatggggaagtcacggatctctcaatgtgccaatggatggcaactcgttta
gtttcagcatctactgatggcacggtaaagatctgggcagacaagaagtcattgcctctt
gcaactctaaggccccatgatggtcaacctgttggttctgttgcattcttaacctcccct
caccgccctgatcacatagttcttctaactgctggtgctctcaaccgagaactgaagttg
tgggcctctgctggccctgagggatggcttttgccaagtgatgctgaacaatggcagtgc
atgcagacactggatctgtggagttcatctcaacctcagcctgaagaagcatttttcaac
caagttgtggccttacctcgtgttggcctcatcttactagcaaacgcaaagaagaatgct
atatatgcagtgcacatagaatttggatcttctccttctggtactcgcatggactatgta
gctgaatttacagttacaatgccaattttgagttttactggcacaaccaatggcttacaa
attggggacctaggtataattcaggtatattgcgttcaaacgcaagccattcaacaatat
gccctagatttatctcagtgtttgccaccaccattggagcacttggggtcagatgcggtg
tctggtctttgtagtgcttttgaggcagcaaatacttcttccacctattctgcccctgat
ccatctcctgaaatggggggaatgccaagaccgagatcacctctacctgtgagcagctcc
gagagtgcacctatggctaaaggtcctgtatatcccagtcccatagaggtccttaagagt
catgaattgggtacttcgagttcagaagtgaagctctcgggcttggctagtgtaagttct
ggctctgaactgggtaacattccggtcccacctcctccactgagtccaagattatcagga
aggttaagtggttttagaagtcctagaactaagagcttcgaggaaggggctggtggagac
cagttggttcatgaatactcagttgagaggagggtcgaggcccttcctaatgccccctca
gatgatggctcagtaaaggaagagagaaaatctacccatactgaaaactctgtcgttcca
agtgctcccatgttgttcgagaaatcagaaaacatgataacctcatctgagagtttaaca
atgaagatatcttcttctgatagttctctagttacccaagatttgagaggaggagaacta
caggtccaagatgtgactgtcaatgctgaagccaacaatgaagaggttgaagtcaaagta
gtgggagagagtgggcaagatcaagtagaggagaggggaactcttgctccattttctgag
aagactgagaaatgctttctctctcaagcgtctgatatcagctgtgaaactgctagagaa
tgcttttcttctactgaaatattttcccttgaggagcctcgccaagtggaggaagtggga
gttgtagaggaaagagagcagtcttcaagtgctcaggtagaagaacgtcagggaacccca
aaggatatagctattaaaatgaacgaaacttcaccaaatgttaatgcaacacaatctcct
ttatcagctggaaaagggaagaaacaaaaagcaaagccatctcaatcaacagcaccaagt
ccttttaattcaacagattctttaagtggggaccctggttgcagctcagctgttccttca
acagaagctgtctcctctcagattcttgccatgcaggagaccctaaatcagcttgttacc
atgcaaaaggaaatgcagaagcaaatgactgcaatgatctctgtcccagttgcgaaagaa
ggcaagaaaatagaagcagcaattggtcgaagcatggagaaacttgtgaaggccaatatg
gatgccttgtgggcccgtttccaagaggaaaatgcgaagcatgagaaggctgaaagggaa
cgagcccaacagattacaagcttgatcacaaattttacaaacaaggaagtgcctgccatg
ttagagaggactaagaaagagttggctacaatgggaccaacagtaggccaggccattacc
ccagttattggaaagatggtttcttctgccattgctgaatctttccagaaggcacttggt
gacaaagctatgaatcaactggaaaagactattggatcaaggctggaatcttcagtgtct
cgacaaatccagtcacaacttcaaacctctgtgaagcaagctatccaggatgcattgagg
tcgagcatggagtcttcaatgatacctgcatttgaggcatcgtgcagggccatgtttgag
caaattgatactgcattcctgaagggaatgacagagcacactactgctgctctgcagcaa
tttgaatcaacacattcttctttggccatgacattgcgggattctgttgcttctgcctcg
tcaatcactcagacattgtctgccgaattagcagatggtcaacgcaaaattttggctctt
gcagcaaaccaaaatttggggaacccattggctaagcagcaaagcaatggttctcttgct
gctttccatgagatggaggctccagtagacccaacaaaggagctatcaagacttatagca
gaacacaaattcgacgaagcattcaccaaggctcttcaaagaaatgacattgctctgatt
tcctggttgtgctcacaggtcgatttgccagccttactctcaactgtgccattaccctta
agccaagggattatcttggctctcgttcagcggttaacatatgatcttggacctgattca
ccgcgaaaattgacatggattagagaggctgctttggttctaaaccctacggaccccatc
atcaacgctcatgtgcgtggtatcctcgagcaagtttaccaaatgcttatgcaccacatg
tctctcgctacgagctcgtccgacagtagcaacttgcgtgttgtcatgcacatcatcaat
tcccttttgtcaacctgcaaatga
DBGET
integrated database retrieval system
