Amborella trichopoda: 18447478
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Entry
18447478 CDS
T02990
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-3 isoform X2
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
atr
Amborella trichopoda
Pathway
atr03022
Basal transcription factors
atr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18447478
09124 Replication and repair
03420 Nucleotide excision repair
18447478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18447478
03400 DNA repair and recombination proteins [BR:
atr03400
]
18447478
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
18447478
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
18447478
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SAB
DACH_C
Motif
Other DBs
NCBI-GeneID:
18447478
NCBI-ProteinID:
XP_011628233
LinkDB
All DBs
Position
Unknown
AA seq
606 aa
AA seq
DB search
MEPPVVTMRAKYKASGPKDPGVAGVLTMRDDSFIFRPNDPSSSVKLDVSFRCIKGHKFSK
EGSKQALLNLTQDKGGGYMFEFANFKDRDVCRDLVGRVLGRLQCLPPSDQSAQVVPAQPT
TQHDNQLSMAEMEQRMNLLREDSELQKLHRQLVIGGVLTETEFWATRKNLLDDAAHKASK
QRAGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAEKPAVHQAFLKFVPSKMSERDF
WTKYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTVDMAADL
GDDYSHLPGHGILRDGSKESVDSESELPKRTLLQDLNRHAAVVLEGRTLDVELGDTRTVA
EALARSKQAEVATETSDETENQKRLERVSQMTEIEDLQAPRSLPYAPLCIKDPREYFDSQ
RANAFKATGDTGSGVNKDCCHLSTKQAYESLRAQILEVKSVGFKDPIVIPDLALKVLNDV
NQQLSSTDPQLGKNPQATVLDMLPHRTKEELLQHWTSIQELLRHFWSSYPLTTTFLHAKV
NRVKDAMAQIYRKLPEVKESVQSEFRHQVSLLVKPMLQVLDEAFKHYDAEMQKRSTKTSE
GRNGIL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggagccaccagttgtgaccatgcgtgctaagtataaggcctctgggcccaaggatcct
ggagttgcaggggtgttaactatgagagatgatagcttcatattcagaccaaatgaccca
agttcatctgtcaagcttgatgttagtttcagatgcattaaaggtcataagttcagtaaa
gagggttcaaagcaagcacttttgaatctaacacaagataagggtggaggatacatgttt
gagtttgcaaactttaaagacagggatgtttgccgggatcttgtcggaagggtccttggg
aggctccagtgcctgccaccatctgatcagagtgcccaagttgtacctgcacaacctact
actcaacatgataatcaactcagtatggcagagatggagcagagaatgaatcttctgcgt
gaggatagtgaattgcagaaacttcataggcaattagtcatcggtggtgtgctgacagaa
accgagttttgggcgacaagaaagaatcttcttgacgatgcagctcacaaagcatcaaag
caacgagctggatttaaaagtgcaatgcttgcagatgttagaccattgactgatggtcgg
acaaataaagttaccttcagtttgactccagagattattcatcagatttttgctgagaag
ccagcagttcaccaggcctttctaaaatttgtgccaagcaagatgagtgaaagggatttc
tggaccaagtattgtcgagcagagtatctccataggaccaagaattctgtggcagcagca
gcagaggcagctgaagatgaagaactggctgtatttttgaagcatgatgatatattggcc
agcgaagctcgccgtaagatccgacgagtagatccgactgtagatatggctgctgaccta
ggagatgattattcgcatttgccgggtcatggaattcttcgtgatggtagcaaggagagt
gttgattctgagtcagaattgccaaagagaacgctcttacaagatcttaatcgccacgca
gcagttgtcctggaagggaggacattagatgtggagttgggagacacaaggactgtagca
gaagcacttgcaaggtccaaacaggctgaagtggcaactgaaacttctgatgagactgaa
aaccagaaaagactggaaagagtttctcaaatgaccgaaatcgaagatctacaggcacca
cgaagcttaccatatgcacccctatgtatcaaggatccacgggagtactttgattctcag
cgagcaaatgcatttaaagccacaggagatacaggttctggagtaaataaagattgttgt
catctgagcactaaacaagcatatgagtctctgagggcacaaatcttagaggtgaaatca
gtaggatttaaagacccgattgttatacccgacttggcccttaaggttctgaatgatgtg
aatcagcaactttcaagtacagatcctcagcttggaaagaatcctcaggctacagttctt
gacatgctacctcacagaactaaagaggaactcttacagcactggacttctattcaagaa
ctgctgaggcatttttggtcgtcttacccacttactacaacatttttgcatgccaaggtt
aatagagtgaaggatgctatggcacaaatctaccgcaagctcccggaggtaaaggaatct
gtgcagtcagagttccgacatcaagtgtcactgctagtgaaacctatgcttcaggttcta
gatgaggcatttaagcactatgatgcagagatgcagaagagatctacaaagacgagtgag
ggacgaaatggaattctttag
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