Amborella trichopoda: 18447964
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Entry
18447964 CDS
T02990
Name
(RefSeq) DNA polymerase I A, chloroplastic
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
atr
Amborella trichopoda
Pathway
atr03030
DNA replication
atr03410
Base excision repair
atr03420
Nucleotide excision repair
atr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18447964
03410 Base excision repair
18447964
03420 Nucleotide excision repair
18447964
03440 Homologous recombination
18447964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atr03032
]
18447964
03400 DNA repair and recombination proteins [BR:
atr03400
]
18447964
Enzymes [BR:
atr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
18447964
DNA replication proteins [BR:
atr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
18447964
DNA repair and recombination proteins [BR:
atr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
18447964
NER (nucleotide excision repair)
GGR (global genome repair) factors
18447964
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
18447964
NCBI-ProteinID:
XP_006858109
UniProt:
U5D1U8
LinkDB
All DBs
Position
Unknown
AA seq
1229 aa
AA seq
DB search
MGLGVVTAQGVGGPFKPCCYCSPSFWFSSSSSSSSSTHFYRRVASVHSFAASVKGFQRQE
IGSFQEVDSTYSNHSRLAPLKFRSVATLASRSVILESQTGILNDADGSSRVLDFEVRTNL
RSSHSSSNRRLPYFTNGPDPRGERSRSTSLVNWQNTEDEHRQSLRSPINEPLITGTGRVP
PFRTHNSGASVDGINARWLEESRKMRASRLGQQPSCNMSDGSVTAEISRSGTILQKEKND
LVCLKGRTPHVKDPLRSTSFYGQKLEENHVVKSVLNTPYMRESMRGSMTNMRDDLFRLKN
GNYYAQEGQMMSSNRPSYLEPTQNDLGVKNNCSFSVANSPVRTQMKEDAAVDLPTHLGVL
RKQIEGEHAQTNGSLIKKVVFQNSVVPYEFVEEISDDAMAEEILNGQAVNSESIDTFVEK
VTTKTESNNAQAEQRKKLLCLYDKVLIVDNLSVAKSVVSKLTKEYRHLVHACDTEVAKID
VKGETPVGNGEVICFSIYSGEADFGNGKSCIWVDVLDGGRDMLMAFAPFFEDPAIKKVWH
NYSFDNHVLENYGFKVHGFHADTIHLARLWDSSRRAEGGYSLEALTGDPKVMSGPGLTAK
DELISGKISMKTIFGKRKVKKDGSEGKLVTLPPVEELQRKERIPWICYSALDSVSTLKLF
VSLKGKLMAMGWVLDGVQRGTMYDFYEEYWRPFGEILVRMESEGMLVDRCHLSKMEKIAI
QEREIAVNRFRKWASQYCPDALYMNVGSDSQLRLLFFGGMQNRKDPNETLPFEKTFKVPN
VDEFIEEGKKAPAKNRTIVLRSLGVEMHTEMYTPSGWPSVSGDALKAFAGKVSSIPYGAM
DDNDENPVDSVLEEEEAKLNGKEASTSAEIDTSMYGSAYSAFGDGEKGREACHAIAALCE
VCSIDSLISNFILPLQGDRISCGNGRIHCSLNINTETGRLSARRPSLQNQPALEKDRYKI
RQAFIAAPGNSLIVADYGQLELRILAHLSNCKSMLDAFKAGGDFHSRTAMNMYAHVCEAV
EEKRVLLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLSRDWKVSLKE
AKETVNLWYKERKEVLRWQEERKSEAANKGCVHTLLGRARRFPSMANASYSQRGHIERAA
INTPVQGSAADVAMCAMLEISRNSRLKDLGWKLLLQVHDEVILEGPTDSAEEAKAIVVEC
MSKPFYGTNFLKVDLSVDANCEQNWYAAK
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgggggtggttactgcgcaaggggtgggaggccctttcaagccctgctgctac
tgctccccttctttttggttctcttcctcttcttcttcttcttcttccacccatttttac
agacgtgtagcttcagtccattcctttgcagcatctgtcaaggggtttcagaggcaagaa
attggttctttccaggaagtagatagtacatattcaaatcattcacgtcttgcccctcta
aagtttagaagtgttgcaactctagcttccagatcagttattttggaaagccaaactggt
attctgaatgatgcagatgggtcatctcgtgttctagactttgaagtccgcactaatttg
aggagctcacactcctcatccaatagacggttaccatacttcaccaacgggcctgatccc
aggggggaacgatctaggtcaacgagcttagttaattggcaaaatacagaagatgaacat
agacaaagtctaaggagtcccataaatgagccactaataactggaactggtagagttcct
ccttttagaacacataattctggtgcttcagtggatggcatcaatgctaggtggcttgaa
gagagtagaaagatgagggcatcaagattaggtcagcaaccttcttgtaatatgtcggat
ggctcagtgaccgcagaaatttcacgaagtggtacaattttacaaaaagaaaagaatgac
ttggtttgtttgaaaggaagaacccctcatgtaaaagacccacttcgaagtacctccttt
tatggccagaaattagaagaaaatcatgtggtgaaatcagtcctaaataccccatacatg
agagagagcatgcgtggttctatgactaacatgcgtgatgatctttttcgtctaaagaat
ggaaattattatgcccaagaaggtcaaatgatgtcttctaaccgcccctcgtatttggaa
cccacccaaaatgacttgggtgttaagaacaattgttcattttctgttgcaaatagtcct
gtgagaactcaaatgaaggaagatgctgcagtagatcttcctacacacttaggagtattg
aggaaacagattgagggagagcatgcacagactaatgggtctttgattaagaaggtggtg
ttccaaaatagtgttgttccttatgaatttgtggaagagatatcagatgatgctatggca
gaggagattttgaatggacaagctgtcaatagtgaatccattgatacctttgttgagaaa
gtgactactaagactgaatccaataatgcacaggctgagcagagaaagaagcttttatgt
ctctatgataaagttctcatagttgacaatctctcagtggcaaagtctgttgtttcaaaa
ttaactaaggagtaccggcaccttgtccatgcatgcgatacagaggttgctaagattgat
gtgaagggggaaaccccagtgggtaatggagaagttatttgtttcagcatctattcgggt
gaagcagattttggaaatggaaaatcatgtatctgggtagatgttcttgatggtgggaga
gatatgttgatggcatttgcgcccttttttgaagacccagctataaaaaaagtttggcat
aactatagctttgataatcatgtcttggagaactatggatttaaggtccatggatttcat
gctgatacgattcatcttgctcgattatgggattcttcaaggcgtgcagaaggcggctat
tctcttgaagctctcacaggtgatccaaaggtcatgtctggccctggcttaactgcaaag
gatgaactgatttctggaaaaatatcaatgaaaactatatttggcaagagaaaggtgaag
aaagatgggtctgaagggaaactcgtcactcttccccctgtagaagagctacaaaggaaa
gagagaattccctggatttgttattctgccctagattcagttagcacactgaagcttttt
gtgagcttgaaggggaagctgatggccatgggatgggtgctggatggagtacaaagggga
accatgtacgatttctatgaagagtactggcgtccatttggtgaaattttggttagaatg
gaatctgaggggatgctggttgatcgttgtcatctgtctaagatggagaaaatagccatt
caagagagagaaattgccgtcaacagatttaggaagtgggcttctcagtattgtccagat
gccttgtacatgaatgtggggagtgattctcaattgcgtctacttttctttggtgggatg
caaaacaggaaggatcccaatgaaactttgccatttgagaagacttttaaggtaccaaat
gttgatgagtttatcgaggaaggcaaaaaagctcctgcaaagaataggacgattgtgctt
cgtagccttggtgttgagatgcacactgagatgtatacaccgtctggctggccctctgtt
agtggagatgctctaaaagcctttgccggaaaggtctcctcaatcccttatggtgcaatg
gatgacaatgatgaaaatcctgtagattcggtattagaagaagaagaagccaagctcaat
gggaaggaggcttcaacttctgctgaaatagatacatctatgtatggaagtgcatattct
gcgtttggtgatggcgagaaagggagggaggcatgtcatgcaattgctgctctttgtgaa
gtttgttcaattgactccttgatatccaactttatattaccccttcagggtgaccggata
tcatgcgggaatggacgcattcattgttctcttaatatcaacactgagactggacgtttg
tctgctaggaggccaagtttgcagaatcaacctgcattagagaaggatcggtacaaaatt
cgtcaggcttttattgcggcacctgggaactctctcattgttgctgattatgggcagctg
gagctgagaatccttgcacacctgtccaattgcaagagtatgttggatgctttcaaagct
ggtggagatttccattcaaggacagccatgaatatgtatgcacatgtgtgcgaggctgta
gaggaaaagcgtgttcttcttgagtggcaccctcagcctggagaagagaaaccaccagtt
cctcttctgaaggatgcttttggttcagaaagaaggaaagcgaaaatgctgaacttctcc
atcgcttatgggaagactcctgttggactttcacgggattggaaggtctctcttaaggaa
gcaaaagaaacagtgaatctttggtataaggaaagaaaggaggttttgcgatggcaagaa
gaacgcaaatcggaggcagccaacaaagggtgtgttcatacacttcttgggcgtgcccgg
cgtttcccatccatggctaatgccagttactctcaaagaggccacattgaacgagctgcc
attaataccccagtgcagggtagtgctgcagatgttgcgatgtgtgccatgcttgaaata
tcgaggaattctcgcttgaaagatcttggttggaagttactcttgcaggtacatgatgaa
gtgatattggaaggacccactgattcagcagaggaagccaaggccatagtcgtggagtgc
atgtccaagccattctatggcaccaactttctcaaagtcgacctatcagtggatgccaac
tgtgaacagaactggtacgctgccaagtaa
DBGET
integrated database retrieval system
