Amborella trichopoda: 18448080
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Entry
18448080 CDS
T02990
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18448080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18448080
03110 Chaperones and folding catalysts [BR:
atr03110
]
18448080
03029 Mitochondrial biogenesis [BR:
atr03029
]
18448080
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atr04147
]
18448080
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
18448080
Messenger RNA biogenesis [BR:
atr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
18448080
Chaperones and folding catalysts [BR:
atr03110
]
Heat shock proteins
HSP60 / Chaperonin
18448080
Mitochondrial biogenesis [BR:
atr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
18448080
Exosome [BR:
atr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
18448080
Exosomal proteins of other body fluids (saliva and urine)
18448080
Exosomal proteins of breast cancer cells
18448080
Exosomal proteins of colorectal cancer cells
18448080
Exosomal proteins of bladder cancer cells
18448080
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
18448080
NCBI-ProteinID:
XP_011628474
LinkDB
All DBs
Position
Unknown
AA seq
587 aa
AA seq
DB search
MVLNLSCSCPQHSLSRWWGRPKLASNSLVTALGAKHSVTLTRFCIRAGPKRISFGNDCRR
ALQAGVDKLADAVAVTLGPRGRNVVLDEAGIPKVINDGVTIARAIELQDSIENMGALLIQ
EVASKTNDAAGDGTTTAIILGREMIRLGLLALALGANPVALKKGIDRTVHELVKVLRSKC
RSIKGREDIKAVASISAGNDDVIGNMIAEAIDKIGANGIISIESSSSFETCLQIEEGMKI
DKGYISPQFITNQEKSTVEFEDARVLVTDQKISNVKDIIPLLEKTSQLSVPLLIIAEDIS
HGVLATLITNKVRGVLNVAVIKAPGFGEGKKALLQDIALMTGADFLAGDLGMALADATSD
QLGIAQKITITNNSTTIIADPIMKAEIQARVAQIKKDLAETDSAYLSRKLSERIAKLSGG
VAVIKVGAHTESELEEKKLRIEDAKNATFAAIDEGIAPGGGAVYVHLSKHISDIKDDIKD
PEEKLGADIVQKALLVPAALIAENAGSEGSIVIERILGSDWEMGYNAMTYKYENLFIEGV
IDPCRVSRCGLQNAASIAGVVLLTQAALFEKIKSPKPTVPHIPGISP
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggttctcaacctatcgtgctcatgccctcaacactctctctctagatggtgggggaga
ccaaaattagcttcaaattctttagtcacagctctgggtgctaagcattcagtgacgctc
actaggttttgcataagagcaggacccaagaggatatcttttggcaatgactgcagaaga
gccttgcaggctggagttgataagctcgctgatgctgtcgctgtaaccttaggacccaga
gggcgcaatgttgttcttgatgaggctggaattccgaaagttatcaatgatggtgtaaca
attgcccgtgctatcgagcttcaagattccattgaaaatatgggagcattgttgattcaa
gaggttgctagcaagacaaatgatgcagcaggtgatggaacaaccactgccattattctt
ggaagagagatgatcagactgggacttctggctcttgctttgggggcaaatccagttgct
ttgaagaaaggaattgataggactgtgcatgagctggtcaaagtgttgaggagtaagtgt
agatctataaaaggaagggaagatataaaagctgtggcatcgatctctgctggaaatgat
gacgtcattggaaacatgattgctgaagctatcgataagattggtgctaatggaatcatc
tccattgaatcgtcatcctctttcgaaacctgtcttcaaatcgaagaaggaatgaagatt
gacaaaggatacatttctcctcaatttattacgaatcaggaaaaatctactgttgagttt
gaggatgctagagttttggtgactgatcagaaaatttcaaatgttaaggatatcattcca
cttttagaaaaaacgagtcagttgagtgtcccactactgataattgctgaggatatttca
catggagtattggcaacattgatcacaaacaaagtgcgtggtgttcttaatgttgcagtc
atcaaggcacctggatttggggaaggaaaaaaggctcttctacaagacattgctcttatg
acaggtgcagattttcttgctggtgacttgggcatggcacttgcagatgcaacctcagat
caacttggcattgctcaaaaaattactattacaaacaattctacaacaattattgccgat
ccaatcatgaaagcggaaatccaagcaagggttgctcaaataaagaaagatttagctgag
acagacagtgcctacttgtcgagaaagctctctgagagaattgcaaagctaagcggtgga
gtagctgttattaaggtaggggctcacaccgaatccgaattagaggaaaagaagctgaga
atcgaggatgcaaagaatgcaacttttgctgccatagatgaaggcatagccccaggtggt
ggggctgtgtatgttcacttgtccaagcacatttctgatataaaagatgacataaaggat
cctgaagagaaactcggtgctgacatagtccaaaaggcacttcttgtaccagcagctttg
attgctgagaatgcaggctctgaaggatcaattgtgatagagaggattttgggtagcgat
tgggagatgggttacaatgcaatgacatacaaatatgaaaatcttttcattgagggtgtg
atagacccttgtcgagtttcacggtgcgggcttcagaatgcagcttcaattgctggagtg
gttcttttgactcaggctgccctttttgagaagataaagagtcctaaaccgactgttcct
catatccctgggatttctccttga
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