Amborella trichopoda: 18448398
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Entry
18448398 CDS
T02990
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
atr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18448398
03015 mRNA surveillance pathway
18448398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18448398
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18448398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
18448398
NCBI-ProteinID:
XP_011628593
LinkDB
All DBs
Position
Unknown
AA seq
419 aa
AA seq
DB search
MAKSSRARAASPPASMSGSSSFSGSSSGSDSRSRSRSRSRSKSFSSSSPSGSASSKSRSP
PPPKRSPAVAARRSRSSPPPAKRASPPRKASPVPESVVLHIDQLTRNVNEAHLKEIFSNF
GEVVNVELTMDRTVQLPRGYGYVEFKTRADAEKALLYMDGSQIDGNVVRARFTLPPRQKA
SPPPKAGAGPLKREPPPRDSTGAEVEKDAVQRPRETSPRRKPQPSPRRRSPVGPRRGESP
RHRPADSPPRRRNNSPPPRRRVESPIYRRGDSPPRRRPASPARRRSPSPAHRRHRSPIRV
SPRRGRGSPVGRKRSPIPLRRRSPPRRARSPIRRSPIGRRRSRSPIRRPGRSRSRSISPR
SRGRAAPPRRGRSTSSSSGSPSPRRGNRRLSKSRSPRRPGRGRSSSKSSSGSSPSPKPN
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtcaagccgagctcgtgctgctagccctcctgcttccatgtctggttcttcc
tctttctctggctcgtcttctggctctgattctcgctctaggtctcgttctaggtctcgc
tctaagtcatttagttcatcatctccttctggtagtgccagttccaagagccgaagcccg
cctcccccaaaacgaagtcctgctgtagctgctcgtaggagtcgttcctcacctccacca
gctaaacgagcttccccccctaggaaagcctctccagtccctgagtcagtggtcctccac
attgaccaactcactagaaatgtgaatgaagcccatttgaaagaaatattcagtaacttt
ggtgaagtggttaatgtggaactcacaatggaccgaactgtccagttgccacgaggctat
gggtatgttgagttcaagacaagagctgatgctgaaaaagctcttctttacatggatggg
agtcagattgatgggaatgttgttcgggcacggttcaccctaccaccacgccagaaggcc
tcaccaccacccaaggcaggagcaggtcctctgaaaagagaacctcctccaagggatagt
actggtgcagaagttgaaaaggatgcagtgcagcgtccaagggaaacttcgccacgtcgc
aaaccacaaccatcccctcgaaggagatcacctgttggcccgcggaggggggaatcccct
cggcacaggcctgctgattctccccctcgtcgacgcaacaactctcctcctcctcgtcgc
cgagtggagtctcccatttaccgtcgtggtgactctccacctcgaagaagacctgcttct
cccgctagacggcgctccccatctcctgctcatcgaaggcacaggtctcctattcgggtt
tctccacgaagaggtagaggcagtccagttggccgcaagcgttctcctattcctttgaga
aggcggtcacctcccagacgagcgcgtagtccgattaggaggtctcccataggacgtcgt
cgcagtcgctctccaattcgcaggccaggtcgctctcgctcaagatccatctctcctcgc
agtaggggcagggcagcacctccacgacgtggaaggtccacctcatcttcatctggatcg
ccaagcccccgcaggggaaacaggaggttgtctaaaagccgcagtcctagaaggcctggt
agaggacgaagcagtagcaagagtagtagcggtagctctccctcaccaaaacccaattaa
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