Amborella trichopoda: 18448492
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Entry
18448492 CDS
T02990
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18448492
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
18448492
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MID_MedPIWI
Med13_N
Med13_C
Motif
Other DBs
NCBI-GeneID:
18448492
NCBI-ProteinID:
XP_006858614
UniProt:
U5D3C4
LinkDB
All DBs
Position
Unknown
AA seq
1989 aa
AA seq
DB search
MWTNVFRIGGLQLVSWFQLLPCEYDATTLTDKSVNAEGQKDASTLLVLSSHLQLQNEGYL
STWTNSFVGPWDPSQGVHNPDEKIKLWLFLPGRHTAIVGAAQPAVSRLRVVGAGLWVAPG
DSEEVAIALSQALRNRIERAIRGLSYVRFGDAFTRCQSIARTEKHFRRVMHTFEFIFAAT
KEAIYVHVIVSAKRTRMLSGYDMEVVLRHNSSSKFGGLPVVVAPHGMRGSLTGCCPSDLV
KQIYFSKAKALSSMTVLGIPFSVTPSSGCKVRGQNCYAEVSLGIPSSKVETTLLQNSPQG
TVAKFDHTETHCSPGVAKSEGKQADYVQAFERTFIYPMEAVLVPVMNTILARTSLRRFWL
QDLVGTLLLETSPLSDLSSPPFSMDCFVPGSLNRSDIPESSWIESNVLCHHFYNSSSNSN
SSSSSSSSVYSTSSESDCEVVMGSEDLEADADSLASRKAVLSSYDMFENEGSKTVQASKR
AHSEITDSFGQGLGPVKSARKGNESTAQTLAAGDGGSITDVYSSIDAHAISTAGAVKDRI
VNPWDWGDDDRGVGMDIQTLLAEYGDLGDLFVNDVLDFGEPPGTAESQALMFPVADPGDI
AGTPGTGGLDVSDQMLLPVLDFSSLEGFNQPPTAVKDDATSRVHEPMNEIQSSGAVSISS
GHSAGELDLLSKAEAMLIFAPEYMAVESPSSTMSSATSTGYHYCPNSGKVDSYQKNSAVY
SYGATPPPSPLMGSSDQIADTPGKVNDGLTKRDLLLELRKYYMVVQNVDQSGKRLPLGNN
GIVSSKGETAFSASGFGSSSMMTSLHARKTEYESGAFCFLFPLRTVLATDVECLILQAAM
CRIRHVVLSGSDGVPLGLNRAIALSVFDQVLSDASVLSGKISGNLEPKKKESIPVRIAGD
IEGGLLDGSRSAPVGVWRSVGVPQGSKSPSAPKFDSSSLPINAYEEDGASFYGQKQPLQE
LLDAMGLLVQQATAFVDLSLDADYGDGPFGWLAFEEQRRRGFSCGPSMVHAGCGGVLAAC
HSLDIAGVELFDPLSADVHSSSVISLLQSDLKIALKSAFGERNLDGPLPINDWCKGRFQS
IEGGSMSSDGCTVESMINDAKESSSTVTLGIGEPITPPQSSAGIKDSEQQMMPPRSKSTV
MALSVPSILVGYQDDWLKTSANAIQLFEKAPLEPYALPKPMTYYVVCPDIDPLTTAAADF
FQQLGTVYETCKLGTHAPQIVGNQIGLSSEKWSSSGFVLLDVPQSTEKPGSTFSSMGSIS
DFVLALSEGWNASSYCKSLSKVLRTLRLSSNLSANQKEVLGGTCMVIYVVCPFLDPDAVL
QTVVESSRALGSTIFAYDKEKRSLLHSQLAKALSWSSNVDETSISNVLTLSGFSIPKLVL
QIVTAETILRITRPPLTELVVLKEIAFTVYNKARRVPRCINPTEAAPLSILLGGRLRSTL
THVGSPVPGLWKDTVTSRNTGTALQRDGPLSWDSSWQAMRPGESLCDFSASGDVLSQDEL
RYLFEPLFILADPGSLEQGVSLTASEPSRYDETSGVCNNLGGSADTMAGTPIIDVSESDG
VVGSCSQKVVSLHCCYGWTEDWRWLVCIWTDSRGELLDSHIFPFGGISGRQDTKGLQCLF
VQVLQQGCQMLSSFATDAAIVKPRDIVISRIGSFFELECQEWQKAIYAVGGNEVKKWPLQ
LRRSVPESASGNGNSLQQQEISLMQDRAMPSQPNPSLYGSHSKSSSFLKGGLTQTNTRKQ
MLPGQLVGDAPRGVFQWVQSISFVAVSVDHTLQLICPVEMGASPTGVGSQGVGGPPSYWE
GFSSVKSLGSTAASYMVIPNPSMRFLPPMPLQLPVGLTAESPPLAHLLHSKGLAIPLTTG
FVLSRAVPTIRKDFMRNVKDEWPSILSVSLVDYYGGGASSNINAQEVSSSGKGGGVKQCR
IPSSENSGLDAHQILEGVAAELHALSWMTVSPSYLERRTALPFHCDILLRLRRLLHYAEG
QLCEQEKFQ
NT seq
5970 nt
NT seq
+upstream
nt +downstream
nt
atgtggaccaatgtctttagaattggaggtctacaacttgtttcatggttccagttgtta
ccttgtgaatatgatgccaccaccctaactgataaaagtgtgaatgctgaagggcaaaaa
gatgcttccacattgttggtgctctcatctcatttgcagttgcagaatgaaggatatctc
agcacatggaccaattcctttgttggtccctgggatccttcccagggtgtacacaaccca
gatgagaagatcaaactatggcttttcctgcctggacgtcacactgctattgttggagct
gctcagcctgctgtgtctaggttgagagttgttggagctggactctgggtagcccctgga
gattcagaggaggttgcaatcgcattatctcaggctttacgtaatcgtatagaaagagca
ataagagggctttcgtatgtgagatttggggatgcttttacgagatgccaatctattgca
cgaactgaaaaacatttcaggagagtgatgcataccttcgagtttatctttgctgccaca
aaagaagcaatatatgtacatgttattgtctctgcaaaacgaactcggatgctttctgga
tacgacatggaagtggtgcttaggcataactcttctagtaaatttggaggacttccagtt
gttgttgctccacatgggatgaggggtagtcttactggatgttgtccaagcgatcttgtg
aagcagatatattttagcaaagccaaagctttaagttcgatgacagttcttggcatacct
ttctctgttactccatcttctggctgcaaggtcaggggacagaactgctatgcagaagtt
agtctggggatacccagctcaaaagtagagactacattgctacaaaactctccacaagga
actgttgcaaaatttgatcatacagagactcattgttcccctggtgttgctaaaagtgag
gggaaacaggcagattatgtacaagcttttgaaaggacattcatttatcccatggaagct
gtgctggttccagttatgaacacaattttggcacgaacttccctacgaagattctggtta
caagatttggtgggcacactgttgcttgaaacaagtccactttctgatctatccagtcct
cctttttccatggattgctttgtacctggaagtttgaacagaagtgatattccggagagc
tcatggattgagtcgaatgtactgtgccatcatttttacaatagtagcagcaatagtaac
agtagtagcagtagtagcagtagcgtgtatagcacatctagtgagagtgattgtgaggta
gtaatgggatctgaggatcttgaagcagacgctgattcacttgcatctagaaaggctgtt
ttatcttcatatgacatgtttgagaacgaggggtcaaaaactgtacaggcttcaaagcgt
gcccattcagaaataacggactcatttggtcaaggattaggtccagtgaaaagtgcacgt
aaaggaaatgagtcaacagcccaaaccttagctgctggggatggtggatctattaccgat
gtttacagttctattgatgcacatgctatttcaactgcaggtgcagtaaaagatagaatt
gtgaatccttgggattggggtgatgatgacagaggtgtgggaatggacattcaaacactt
cttgcagagtatggtgatcttggagacttgtttgttaatgatgttttggactttggcgag
cccccaggcactgcagaatctcaggcccttatgtttccagttgccgatcctggagatatt
gctggtacccctggtacaggtggcctagatgtatcagatcaaatgcttctgccagtgcta
gacttttcatctcttgagggcttcaatcaaccacctactgctgtcaaggacgatgctact
agccgagttcatgagcccatgaatgaaatccagtcatctggggcagtcagcatatcttct
ggacattcagctggggagctagatttattgtcaaaagcggaagccatgttgatatttgct
ccagaatatatggctgttgaatctccctcatctaccatgtcttctgctacttctacagga
tatcattactgtccaaattctggaaaagttgatagttatcagaaaaactctgctgtttat
tcgtatggggccacaccaccaccttctcctctcatgggttcttcagatcaaattgcagac
acccctggcaaagtaaatgatggtttgacaaagcgtgacctgctcctcgagttaagaaag
tattacatggttgttcagaatgtggatcaatctgggaagagattgcctcttggtaacaat
ggtattgtttcgtctaaaggggagacagcattttctgcttcaggatttggttcatcaagc
atgatgacatctctccatgcaaggaaaactgaatatgaatctggggcattctgcttcctg
tttcctttgaggactgtgctggcaacagatgttgaatgccttattcttcaggctgctatg
tgcaggataaggcatgtagtgttgtctggcagcgacggggtaccactcggactcaaccgg
gcaattgctctttcagtctttgatcaggttcttagtgacgcaagtgtcttgtcaggtaag
atatctggaaatcttgaaccaaagaagaaagagtctataccagtaagaatagctggcgat
attgaaggaggattgcttgatggaagccgaagtgcaccagtgggtgtttggcgttcagtt
ggagttccacaaggctcaaagtcgccaagtgcaccaaaatttgacagctcttctcttccg
atcaatgcttatgaagaagatggtgctagcttttatggacagaaacaacctcttcaggag
ctgcttgatgcaatggggttgttggtgcagcaagctactgcattcgtggatctatcgctt
gatgcagattatggggatgggccctttggatggcttgcattcgaggaacagcggaggcgt
ggattttcatgtgggccttctatggttcatgcaggatgtgggggtgttttagctgcttgc
cattctctagacatcgctggcgtggagctatttgatccactctctgcagatgttcattcg
tcttccgtgattagtttgcttcagtccgatttaaaaatagccctaaagtctgcatttggt
gaaagaaatctggacggtccattgccaatcaatgattggtgcaaaggtcgctttcagtca
attgaaggagggagcatgtctagcgatggttgtactgttgaatcgatgataaatgatgca
aaggaatcttcaagcactgtaactcttggcattggagagccaattactccaccccaatct
tctgcgggcattaaagattccgaacaacaaatgatgccccctcgtagtaaatcaacagtt
atggcactctcagttccttcaatacttgttggatatcaggacgattggctcaagacatct
gcaaatgccatacagttatttgagaaggctcccctagaaccatatgctcttcccaaacct
atgacttattacgttgtatgtccagacattgacccgctgactactgctgctgctgacttt
ttccagcaactgggaactgtatatgagacttgcaaattggggacgcatgcaccccaaatt
gttggaaatcagatcggactatcctcagagaagtggtcatcttctggttttgttctttta
gatgtcccccaatcaactgaaaagcctggaagcacattttcctccatgggctcaattagt
gactttgttcttgccttaagtgaaggctggaacgcaagcagctattgcaaatctctttcg
aaggtgctcaggacccttcgactctcgtcaaatttgtctgcgaatcaaaaagaagtttta
ggtggtacatgtatggtgatctatgttgtttgtcccttcctcgaccctgatgctgttctt
cagactgtagttgagtcttccagagctctggggtcaaccatttttgcatatgacaaagag
aagagatcactgttgcacagtcaacttgcgaaggctctgagctggtcttccaatgtagac
gaaacatcaatttccaatgttctaaccctttcaggattcagtattcctaagttggtcttg
cagattgtgacagcagaaacaatcctcaggataactaggccaccacttactgagttggtt
gtcttgaaggagatagccttcactgtatacaacaaggctcgaagagttccccgctgtatt
aacccaactgaagcagcaccattgtcaatacttttgggtggcaggcttcgatcaacattg
acccatgtgggttcacctgttcctggcctttggaaggatacagtgacgtctcgaaataca
ggaaccgctcttcaaagagatggcccactcagttgggatagctcgtggcaagcaatgagg
cctggagaatctctttgtgattttagtgcttcaggagacgttctttctcaggacgaattg
cgatacttatttgaaccactattcatattggcagatcctggctccttggagcagggggtg
tcacttactgcttcagaaccatctagatatgatgagaccagtggagtatgtaacaacctg
ggtggctctgcagatactatggctggaacccccatcattgacgtatcagaaagcgatggt
gtggttggatcttgcagtcaaaaggtggtgagccttcattgctgctatgggtggactgag
gattggcgttggctagtctgcatatggacagattcaaggggagagttgttagacagccat
atttttccatttgggggtattagtggtcgtcaagacacaaaaggtctccagtgtctcttt
gtacaagttcttcagcagggttgtcagatgttgtcatcctttgctaccgatgcagctatt
gtcaagcctagggatattgtaatctcgcgcattggcagcttctttgagctggagtgccaa
gaatggcagaaggctatttatgcggttgggggaaatgaagttaagaaatggcccttgcaa
ctgaggcgatctgttccagagtcagcatctggtaatggaaactccctacagcagcaggag
ataagcttgatgcaggatagagccatgccttctcaaccaaacccttctctttatggctct
cattcaaaatcatccagctttttgaagggtggactaacacaaacaaatacaagaaagcag
atgttgccaggacagcttgtgggagatgccccaagaggagttttccagtgggtgcagagt
atcagcttcgtagcagtctccgtcgaccataccctgcagttgatatgccctgtagagatg
ggtgcctctcctactggggtaggaagtcaaggtgttggaggaccgccaagctactgggaa
gggttcagttcagtcaaatctcttggttcaactgcagcatcttacatggtcataccaaat
ccgagtatgcgttttctccctcccatgcctttgcagctcccggtggggctcacagccgag
tccccgcctcttgctcatctcttacacagcaaaggtttggccattcctctcacaactggg
tttgtgctatcaagggcagtgcccacaatcaggaaggatttcatgagaaatgtcaaggat
gaatggccttcgatcctttctgtcagtttagttgattactatggtggtggtgcctccagc
aatattaatgcccaggaagtgtcatcatcaggtaagggtggtggagttaagcagtgcaga
attccaagttcagagaacagtgggttagatgctcatcagattttagagggtgtggcagca
gaattacatgctctctcatggatgacggttagcccatcatatctagagagacgcactgct
ctgccattccattgcgacatattgctgaggctgaggaggcttcttcactatgcggagggg
cagctttgtgaacaggagaagtttcaatga
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integrated database retrieval system
