Amborella trichopoda: 18448598
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Entry
18448598 CDS
T02990
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
atr
Amborella trichopoda
Pathway
atr04120
Ubiquitin mediated proteolysis
atr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18448598
04120 Ubiquitin mediated proteolysis
18448598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atr04121
]
18448598
Enzymes [BR:
atr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18448598
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
18448598
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_16
zf-HC5HC2H
zf-RING_11
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
18448598
NCBI-ProteinID:
XP_006858721
UniProt:
U5DI02
LinkDB
All DBs
Position
Unknown
AA seq
575 aa
AA seq
DB search
MMRLSTYAGASFVGAMAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQC
IKRLFLGSLREAEVERLNEQSWREIMEILFAITIFREEFSVAFLSMVTALLLIKAFHWLA
QKRVEYIETTPTVTVLSHIRIVSFLGFLLLLDCIFLYSSVSYLLRTRRASVALFFSFEYM
ILATTTVSTFLKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLFFFLAIFINYG
LPLHLIRELYETFRNFKARVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMV
TAKKLICGHLFHVHCLRSWLERQQTCPTCRSYVLPPENGTSSSGGHQVAQPHRHQHGGAG
GSGTAEASAQNTGGGVAEDNVSLHQARLRAAAAAANVYGGSYVYPSANAFVWSPGYALVP
KVFLQGAMGRESTSEEATDSSGENAQTTPSAHLSGNSNFTFPQGPQYTFLPLKMPLTNGA
SDEGSSRDPTMPSSSSCLLAQFEAQEKFLRYNIEVLQNQLKTLQNQKPIDSKAAKEEASS
GVTESKGKGPAHCASPRASSSDCRHHPEIQEAQTD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttgagcacatacgcgggcgctagtttcgttggtgcaatggccattatttac
catgcctttaatagtagaggccagttttacccagccatggtgtatctatcgacctcaaag
atcagtttggtgcttcttctcaatatgggtttggttataatgtgcattctatggcaatgt
atcaagagattgtttcttgggtccctcagagaagctgaagtggaaaggttgaatgagcag
tcatggcgagaaatcatggaaatcctatttgcaataaccatattcagagaagagttttcg
gttgcttttctttcaatggtcactgcactattgctaatcaaggcattccattggttggct
caaaaacgggttgaatacattgagacgactccaacggttaccgtgttatctcatattcga
attgtttcattccttgggtttctactgctattagattgcatatttttgtacagttcagta
tcatatttattgaggaccaggcgggcatcagttgcactcttcttttcatttgaatacatg
attctggcaaccactacagtgtcaacttttttgaagtatgttttctatgtcagtgatatg
ctgatggaagggcaatgggaaagaaaggctgtctacacattttacttagaacttatccgc
gacttgcttcacttgtccatgtacctcttcttcttcctagcaattttcataaactatggc
ttgccactgcatttgatccgggaactctatgaaacatttcgtaacttcaaggcacgtgtt
gctgattatattcgctatcgcaagatcacatctaatatgaacgatcgattccctgatgca
acgcctgaagaacttaatgcaagtgatgccacatgcataatttgtcgtgaagagatggtc
actgccaagaagttgatttgtggacatctttttcatgtgcactgtttgagatcatggctc
gaaaggcagcaaacttgccctacctgtcgatcatatgttcttcctcctgagaatggaaca
tcttcatctggagggcatcaagttgcacagcctcatcgacatcaacatggtggtgcagga
gggtctggtacagctgaagcatctgctcagaacactggtggtggcgtcgcagaggataat
gtgagcttgcatcaggctaggctccgagccgctgctgcagctgctaatgtctatggggga
tcatatgtttatccttcagcaaatgcatttgtatggtcaccaggttatgctttggtacca
aaggtgttcttgcaaggagccatgggtagagagtcaaccagtgaagaggccacggattcc
tcaggagaaaatgctcaaaccactccatcagcacaccttagtggaaactcaaactttact
ttccctcaagggccacaatatacttttctcccacttaaaatgccccttaccaatggtgca
agtgatgaaggatccagtagagatccaaccatgccaagttcttcttcatgtttgcttgct
caatttgaggcccaagagaagtttctgagatataatattgaggtgttacaaaatcagttg
aagactttacaaaaccagaagcccattgattcaaaggctgcaaaagaagaagcatcttct
ggtgtaacagaaagcaagggtaaaggccctgcccattgtgcttctcctcgggcttcctca
tcagattgcaggcaccatcctgagattcaagaagctcaaacggattga
DBGET
integrated database retrieval system
