Amborella trichopoda: 18448613
Help
Entry
18448613 CDS
T02990
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18448613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18448613
03041 Spliceosome [BR:
atr03041
]
18448613
03009 Ribosome biogenesis [BR:
atr03009
]
18448613
03016 Transfer RNA biogenesis [BR:
atr03016
]
18448613
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18448613
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
18448613
Spliceosome [BR:
atr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18448613
Complex C
U4/U6.U5 tri-SnRNP related factors
18448613
Ribosome biogenesis [BR:
atr03009
]
Eukaryotic type
Pre-60S particles
Helicases
18448613
Transfer RNA biogenesis [BR:
atr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
18448613
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
18448613
NCBI-ProteinID:
XP_006858736
UniProt:
U5DI10
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MGSLKRKTLDGSSEEDLNPSLKHQKDGNSPPLLSNKPVTCHHDVSYPEGFVRRRGPEKPL
PLKPAKEFPFELDPFQLESIKCLDNGESVMVSAHTSAGKTVVALYAIAMALQDKQRVIYT
SPIKALSNQKFREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIIREVSW
IIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TDYRPTPLQHYIFPSGGTGLYLVVDENGKFREDSFQKALNALVPAREGGERKKENGKWQK
GFLTRKAGEESDIFKMVKMIMQRQYDPVILFSFSKRECELLAMQMAKMDLCDENEKQLTE
NIFWSAMDLLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGLDERGICILMVDE
KLEPSTAKTMVKGSADCLNSAFHLSYNMLLNQMRCEDGNPENLLRNSFYQFQSDRALPDL
EKQVKVLEEERDSIVIEEEEKLKGYYSLIQQYKSLKKDIRDITLSPKYSLPFMQPGRLVR
IQCARSDTRVSYFSVEDQVTWGVIVNFERVIHSADGHTNLKPEDDQYTIDVLTRCVANKE
GSGKKTVKIVPLKEPGEPLVVSIPITQLDSFSCACIANMPKDLLPLEAREHTLKKISEIL
ARFPDGVPLLDPKEDMNVHSSSYDKAVRRVETLEGLIEKHELTTSPLLRQKLAVLHEKQE
LTAKIKLTRKALRSSTALAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEELT
LTELMFSGVLKDVSVEQLVALLSCFVWTEKLKDMPKPREELEMLYSQLQDTARRVAKVQL
ECKIQIDVEDFVNSFRPDIMEVVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQL
IEATKSIGETELEAKFEDAVSKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgggttctctcaaaagaaaaaccctagatggctcctctgaagaagacctcaacccttct
ctaaaacaccagaaagatggtaactctccaccgctcctctcaaacaaacccgtaacttgt
catcatgatgtctcgtaccctgaaggttttgttcgtcgcagaggcccggaaaagcccttg
cctttgaaaccggcaaaggaatttccctttgagcttgacccgttccagctcgagtctatc
aagtgccttgacaatggtgaatcagtcatggtatctgcacatacttctgctgggaagact
gttgttgctttatatgccattgccatggctttgcaagacaaacagcgcgtcatctacaca
tctccaattaaggcacttagtaaccagaaatttagagaattcaaagaagaattctctgat
gttggtctgatgactggggatgtaacaattgaaccaaatgcctcttgcttggtcatgact
accgaaatttggcgtagtatgcagtacaagggatccgagattattcgggaggtatcctgg
attatttttgatgaggtgcattacatgcgtgatagagaaagaggggtggtttgggaagaa
agcatagtcatggctccaaagaactctcgttttgtgttcctttcagcaacagtgcctaat
gccaaggaatttgcggattgggttgcaaaggtacaccagcaaccatgtcatatagtttat
acagattatcggcctacccctctccagcattatatctttccttcaggggggactggtcta
tacttggtagtagatgagaacggaaaatttcgagaggacagctttcaaaaagctttaaat
gcacttgttccagccagagaaggtggggaaaggaaaaaggagaatggtaagtggcaaaag
ggatttttaacacgtaaggctggtgaagaaagcgacattttcaagatggtgaaaatgata
atgcaacgacagtatgatccagtgatcctcttcagctttagcaaaagggaatgtgagctt
cttgcaatgcagatggctaagatggacttgtgtgatgaaaatgagaaacagctgacagag
aatattttttggagtgctatggatcttctttcagatgatgataagaaacttcctcaggta
tcgaacatactacccctgcttaaacgtggtataggtgttcaccattctgggttgctacca
attttaaaagaggtgattgagatactctttcaagaaggccttatcaagtgcttgtttgcc
acagaaaccttcagtataggtttgaacatgcctgcgaagaccgttgttttcactaatgtg
cgcaaatttgatggggacaagtttagatggctttctagtggagaatatatacagatgagt
gggcgtgctggtcgtcgtggtcttgatgaacgtggtatttgtattctcatggtggatgag
aaattggaaccatctacagctaagacgatggtaaaaggaagtgctgattgcttgaacagc
gccttccatctaagttacaatatgctgttgaatcaaatgcgttgtgaagatggtaatcct
gaaaatttgctgaggaactctttctatcagttccagtctgaccgtgctcttcctgatctt
gagaaacaagtgaaggttcttgaagaggagagagactcaattgtgattgaggaggaagag
aagttgaagggctattattcccttatccagcagtacaagagtttaaagaaagacattagg
gatattaccctttctcccaagtattctctgcccttcatgcagcctggaaggcttgtgcgt
atccaatgcgcaaggagtgatacaagagtctcatatttttctgttgaggaccaagttaca
tggggtgtgattgtaaattttgagagggtgatacattcggcagatggtcatacgaattta
aaacctgaggatgatcaatatacaattgacgttcttacaaggtgtgttgccaacaaggaa
ggatctggcaagaaaactgttaaaattgttcctttaaaagagccaggggaacctcttgtc
gtgtctatacccattactcagctggatagctttagctgtgcatgtatagcaaatatgccc
aaggatcttttgcctttggaagcacgggaacataccctaaagaagatatcagaaatcctt
gctaggtttcctgatggagtgcctcttttggacccaaaagaggacatgaatgttcacagt
agttcatatgataaggcagttaggcgagttgagaccctggaggggttaatagagaagcat
gaacttactacgtctcctcttctccgacaaaagcttgcagttttacatgagaaacaagaa
ctgacagccaaaattaagttgactcgaaaagcattgcggtcctccacagcattagctttc
aaggatgaactcaaagcgcggaaacgggttcttcgaagacttggttatgcgacgagtgat
gatgtggttgagctgaaggggaaggtggcatgtgagatcagcagtgccgaagagttgaca
ttgactgaactaatgttcagtggggtgctcaaggatgtgagcgtggagcagttggtggcc
cttctctcgtgctttgtttggaccgaaaagctcaaggacatgccgaagcccagggaagag
cttgaaatgctctactctcagctccaagacacagccaggagagttgccaaagtccagctg
gaatgcaagattcagatcgatgtggaagattttgttaattcattccggcccgatataatg
gaggtggtctacgcatgggcaaaaggctcaaaattctacgagataatggagataacgcag
gtgtttgaggggagccttataagggcaatcagaaggcttgaagaggttttgcaacaattg
attgaagccaccaaatccatcggcgaaaccgaactcgaggccaagtttgaggatgcagtc
tccaagatcaagcgcgatattgttttcgccgcatccttgtatttgtaa
DBGET
integrated database retrieval system
