KEGG   Amborella trichopoda: 18448665
Entry
18448665          CDS       T02990                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
atr  Amborella trichopoda
Pathway
atr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18448665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atr03041]
    18448665
Spliceosome [BR:atr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    18448665
 Complex C
   U5 SnRNP specific factors
    18448665
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_EIPR1 NBCH_WD40 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_HPS5 Ge1_WD40 WD_LRWD1 Beta-prop_RIG_1st Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 18448665
NCBI-ProteinID: XP_006858788
UniProt: U5DDF4
LinkDB
Position
Unknown
AA seq 345 aa
MLAVRGPSAPYGAIQVSGHKEGPPLNGKQRTSSLEAPIMLLSGHQSAIYTMKFNPTGTVI
ASGSHDKDIFLWNVQGECKNFLVLKGHKNAILDLQWTTDGTQIISASPDKTLRAWDVEVG
KQVKKMSEHSSFVNACCPARRGPPLVVSGSDDGTAKLWDLRQRGAVQTFPDKYQITAVSF
ADASDKIYTGGIDNDVKVWDLRRGEVTMNLQGHSDMITGMQLSPDGSYLLTNAMDCSLRI
WDMRPYAPQNRCVKIFSGHQHNFEKNLLKCGWAPDGSKVTAGSSDYMVYIWDTTSRRIVY
KLPGHNGSVNECVFHPTEPVIGSCGSDKKIYLGEIEPGPSYQPPK
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgctcgctgtaaggggtccttcagctccatatggtgcgattcaagtatcaggccataaa
gagggccctcctttgaatggcaaacagcgcacttctagcttggaagcaccaattatgctg
ttgtcgggccatcagagtgctatatacactatgaaattcaaccctactggaacagttatt
gcctcgggttcccatgacaaagacatattcctgtggaatgttcagggagaatgcaagaac
ttcttggtcttgaagggccacaagaatgcaattctggacctccagtggactacagatggt
acccagatcatatcagccagccccgacaagacactgagggcttgggatgtggaagtgggg
aagcaggttaagaagatgtctgagcactcctcgttcgtaaacgcgtgctgtcccgcccga
cggggccctccccttgtggtcagcggatctgatgatgggactgccaagctgtgggaccta
cgccagcgtggggctgttcaaaccttccccgacaagtaccaaatcaccgccgtcagtttc
gctgatgcctcggacaaaatatacacaggagggatagacaatgatgttaaggtttgggac
ctacggaggggtgaggtcaccatgaatctccaggggcattcagatatgataacagggatg
cagttgagccctgatggttcttatcttctcaccaatgccatggattgctctctcaggata
tgggatatgaggccatatgctcctcaaaataggtgtgtgaagatattctctgggcaccaa
cacaactttgagaagaacttgctgaaatgtggttgggctccagatgggagcaaggtcaca
gcagggagctcagattacatggtgtatatatgggacaccacttcacgacgcatagtgtac
aaactccccggccacaatggttcagtcaatgaatgtgttttccacccgactgagccagtc
attggttcttgtggtagtgataagaagatatatttgggcgagattgagccaggtccttcg
tatcagccacccaagtaa

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