Amborella trichopoda: 18448921
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Entry
18448921 CDS
T02990
Symbol
RPB2
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03020
RNA polymerase
atr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
18448921 (RPB2)
09124 Replication and repair
03420 Nucleotide excision repair
18448921 (RPB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18448921 (RPB2)
03400 DNA repair and recombination proteins [BR:
atr03400
]
18448921 (RPB2)
Enzymes [BR:
atr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18448921 (RPB2)
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
18448921 (RPB2)
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
18448921 (RPB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
18448921
NCBI-ProteinID:
XP_006859038
UniProt:
U5DE62
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MSGGEDDDYVNEDEEITQEDAWAVISAYFDEKGLVRQQLDSFDEFIQNTMQEIVDESADI
EIRPESQHNPGRQADFVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
LYVDVTKRVIKKGHDHEELAEQQELTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPY
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNKPPSSMFVR
MLSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL
LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETK
KAYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGSLFRTMFRKLTRDVRSYVQ
KCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSH
LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPI
LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVG
VIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQRESPDEGWHDLVAKGFI
EYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSLRHSE
SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGCK
NKTDIIQVHIPYACKLLFQELMAMAIAPRMFTKEEKKPKDHKKKGAPGQS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaggagaggatgacgactatgtcaatgaagatgaggaaatcacacaggaagac
gcctgggcagttatcagtgcatattttgatgagaagggtcttgttcgacaacaacttgat
tcctttgatgaatttattcagaatacaatgcaggaaattgtcgatgaatctgctgatatt
gaaattcgaccagagtctcagcataaccctggcagacaggctgattttgttgagaccatc
tacaagatcagttttggccaaatttatttgagtaagcctatgatgacggaatcagatgga
gaaactgccactttattcccaaaggcggcaagattaagaaacttgacctattcagcccct
ttatatgttgatgtcaccaaacgagtcatcaagaagggacatgaccatgaagaactcgca
gagcagcaagaattgacgaaagtttttattgggaaggttcccatcatgttgcgttctagt
tactgcactttgttccagaactcagaaaaagatctaacagaacttggagaatgtccatac
gaccaaggtggttatttcattatcaatgggagtgagaaagtcctgattgctcaagaaaag
atgagcaccaaccatgtgtatgtatttaagaaaaggcagcccaacaaatacgcgtatgtt
gctgaagtaaggtcaatggcagagtcacaaaacaagccacctagcagcatgtttgttcgt
atgctttcacgaacaagttcaaaagggggctcgtcaggacagtatatacgggctacactc
ccttatatccgggcagaaattcctataattattgtgttccgagcattagggtttgttgcc
gataaagatattctggagcatatttgctacgatttctctgatacccagatgatggagcta
ttgaggccttcattagaagaagcttttgtcattcaaaatcagcaggtagcactggactac
attggaaagcgaggatcaactgttggtgttaccaaggagaagagaatcaagtatgctaaa
gaaattctccaaaaagaaatgttacctcatgttggggtgggggaatattgtgagacaaag
aaggcttattactttggatatatcattcatcggcttctcgtatgtgcacttggtcgaaga
cctgaagatgatcgtgatcattatgggaataaaagactggacctagctggtcccttgctt
ggaagcctgttccgaacgatgtttcggaagctgacaagggatgtccgatcgtatgttcag
aagtgtgttgataatgggaaggaggtaaacctgcagtttgcaataaaagctaaaacaatt
acaagtggtctgaaatattctcttgctacgggaaactggggccaagcaaatgcagctggt
acaagagctggagtttcacaggtcttgaatcgcttgacatttgcatctactttgtctcac
ttacggaggttgaattctcctattgggcgtgaagggaagttggcaaagccccgacaattg
cataattcacattggggcatgatgtgtcctgcagaaactccggaagggcaggcttgtgga
ctggtgaaaaacttggctctgatggtatatattacggtgggttcagctgcaaatcctatt
ctggaatttttggaagagtggagtactgaaaattttgaggaaatatcacctgctgttatt
ccacaagcaacaaagatttttgtcaatggttgctgggtggggattcatcgtaaccctgag
ctattggtgaaaactctaaggcagttgaggagacaggttgatgttaatactgaagttggt
gttatacgagacattcgtttgaaagaactgcgattgtatactgattatggtcggtgtagt
cgtcctctgttcattgtggaaaaacaaaggttgctgataaagaagtcagatattcgagca
ctgcaacaaagggaaagcccagatgaaggttggcatgatcttgtagcaaaaggattcata
gagtatgtggacacagaggaggaagagacgacaatgatctcaatgacgatatctgatctt
gtgagtgccaggctgaaccctgaagaggcatattctgaaacttacactcactgtgaaatt
cacccatctctgatattgggtgtctgtgcctcgattattccatttcctgatcataaccag
tctcctcgtaacacataccagtctgccatggggaagcaagccatgggcatttatgtgacc
aattaccagcttcgaatggatactttggcatatgttctttactatcctcagaagcctctt
gttacaacacgtgcaatggaacacctgcactttaggcagctgcctgctggaattaatgca
attgttgcaatttcctgttattcaggatacaaccaagaagattctgttatcatgaatcag
tcttcaatagatcggggatttttccgatcattatttttccgttcatacagagatgaagag
aagaagatgggaactcttgtgaaagaagactttggtcgtccaaatcgggaaaacactatg
ggcatgcggcatggttcatatgataagttggatgatgatggtcttgcaccacctggtaca
agggtctctggtgaggatgtcattattgggaaaacgaccccaattactcaggaagaaatg
caagggcaggcttcaaggtacacaaggcgtgatcacagcacaagtttgcgccacagtgaa
agtgggatggtggatcaggttttattgacgaccaatgctgatggcctcaggtttgtgaaa
gttagaatgagatcagtgcgcataccacagataggggataaatttagcagtagacatggt
caaaagggaactgtgggcatgacatacacacaggaggacatgccatggacagtggaaggc
attacacctgatatcatcgtaaacccacatgctattccctctcgaatgacaattgggcag
ctgattgagtgtatcatgggaaaggtagctgctcacatggggaaagaaggagatgctacc
cctttcactgatgtcactgtggacaatatcagcaaagcccttcacaaatgtgggtatcaa
atgcgtggctttgagaccatgtacaatggtcacacaggcaggaggttgagtgccatgata
ttcttgggccctacatattaccagagattgaagcatatggtggatgacaagatccattct
cgtgggcgtgggccagtgcagatcctcacgaggcagcctgctgagggaaggtctcgtgat
ggaggccttcgctttggagagatggagcgtgattgcatgatagcccatggggctgctcac
ttccttaaggagaggctttttgaccaaagtgatgcctatagggtccatgtttgtgaacaa
tgtggcttaatcgcgatagccaacctcaagaagaattctttcgagtgcagaggttgtaag
aacaagactgacattattcaggtgcacataccctatgcatgtaagctgcttttccaagag
ctcatggccatggctattgccccaagaatgttcaccaaggaagagaagaaaccaaaagat
cataagaagaaaggagcccctggacaaagctag
DBGET
integrated database retrieval system
