Amborella trichopoda: 18449050
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Entry
18449050 CDS
T02990
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
atr03016
]
18449050
Enzymes [BR:
atr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
18449050
Transfer RNA biogenesis [BR:
atr03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
18449050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
Motif
Other DBs
NCBI-GeneID:
18449050
NCBI-ProteinID:
XP_006859161
UniProt:
U5DJ52
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All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MEDIEDVIGSGAPPGLRFPMIAVGMKPKKLQSRKMEDIPSLNIPGTQTIYIKTFGCSHNQ
SDSEYMAGQLSAYGYAINDNPEEADLWLINTCTVKSPSQSAMETLILKSKSARKPLVVAG
CVPQGSKDLKELEGVSIIGVQQIDRVVEVVEETLKGHEVRLLKRSTLPALDLPKVRKNRF
VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVNRVRQVISGGVKEIWLSSEDTGAYG
RDIGVNLPILLNAIVAELPPDRSTILRIGMTNPPFILEHLNEIAKVLCHPCVYSFLHVPV
QSGSDFVLKAMNREYTVGEFKVVVDTLNQLVPGMQIATDIICGFPGETDEDFAETIKLIQ
EYRFPHVHISQFYPRPGTPAARMKKVPSRTVKNRSRELTSVFESFTPYHGMEGRIEKIWI
TETATDGIYLVGHTKGYIQVLVVAPKSMLGTSTYVKITSVGRWSVFGDVIEIPDDNICGG
GDVLMGDSAIFGLSKDGSCSIEETECYACDCEERCNDMDTHKVSTNITNQEDRRINGGSS
NYYSSMKHGVSLRWLISRKQKNWLGSKDGRTSGAGEKEEVSRELARFSYIDWALMGVMVL
SFACAMISAILYFFIVNSS
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggaagatattgaagatgtgattggcagtggagctcctcctggtcttcgctttcctatg
atagcagttggaatgaaacccaaaaagcttcaatctcgcaaaatggaggacatcccttca
ctgaacatacctggaacgcagacgatatacataaagacatttggatgctcccacaatcag
agtgacagtgaatacatggccggccaactttcagcttatggatatgctattaatgacaat
cctgaggaggcagatttgtggctgattaatacatgtactgtgaagtcacctagtcaatct
gctatggagaccctgatattaaaatctaaaagtgcgaggaaaccactagtggtggcagga
tgcgtccctcaaggcagtaaagatctgaaggaactggaaggtgtgagtataattggtgtt
caacaaattgatcgagttgtggaggtagttgaagaaacattgaaaggtcatgaggtgcgc
ctcttgaaaagaagcacgctgccagcacttgacctgccaaaggtgaggaagaatagattt
gttgagattcttcccattaacgtcggctgtttaggcgcttgcacttattgtaagacaaag
catgctcgtggacatttagggagttatacagtggaaagcctggttaatcgtgttagacaa
gttatatcaggaggagtaaaagagatttggttgagcagtgaagacacgggtgcttatggt
cgagatataggagtcaatcttccaattttactgaatgcaattgttgcggagcttcctcct
gatagaagtacaatacttcggattggcatgacaaatcctccttttattcttgagcacttg
aatgagatagctaaagttttgtgccatccatgtgtgtactcatttctgcatgtaccagtc
cagtctggaagtgattttgtactgaaggcaatgaatcgagaatatactgtgggtgagttc
aaagttgtggtagatactctaaatcaactagtacctggcatgcaaattgcaactgacata
atatgtggattcccaggtgaaacagatgaagattttgctgaaaccattaagctgattcag
gagtatagatttccacatgttcatatctcacaattctatccaagaccaggtacgcctgct
gcaaggatgaagaaagtgccaagtcgcactgtgaagaaccgcagccgtgaattgacatcg
gtttttgaatcattcactccttaccatggaatggaaggacggattgagaaaatatggatt
acagaaactgctactgatgggatttacttggtgggacacacaaaagggtatattcaggta
ctcgtggttgcccccaagagcatgctcggcacctcaacctatgtgaagattacttcagta
ggcagatggtcagtatttggagatgtgattgaaattccagatgacaatatttgtggtgga
ggagacgtattaatgggtgattccgctatttttggtttgtctaaagatggttcctgctct
atagaagaaactgaatgttatgcatgtgactgtgaggagagatgcaacgacatggatact
cataaagtttccaccaatattacaaatcaagaagatagaagaatcaacggaggaagttca
aattactactcgagcatgaaacatggtgtatctttacggtggttgatatcaaggaagcag
aagaactggcttggaagcaaagatggccgcacttcaggagctggtgagaaagaagaagtg
agcagagagttagccaggtttagttacatcgattgggcccttatgggggtgatggttttg
agctttgcatgtgctatgatttcagcaattttgtatttctttattgtcaactcatcatag
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