Amyelois transitella (navel orangeworm): 106129046
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Entry
106129046 CDS
T09957
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106129046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106129046
03041 Spliceosome [BR:
atra03041
]
106129046
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106129046
Spliceosome [BR:
atra03041
]
Complex B
Other components
Prp19-related factors
106129046
Complex C
106129046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_10
Mad3_BUB1_I
PPR
NRDE-2
ARM_TT21
ARM_TT21_C
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
106129046
NCBI-ProteinID:
XP_013182935
LinkDB
All DBs
Position
2:complement(join(9992559..9995051,9995687..9995725))
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AA seq
843 aa
AA seq
DB search
MPLLDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKNEINMIYERALKEL
PGSFKLWYNYLKLRRSQIRGRCITDPCYEDVNNCFERSLVFMHKMPRLWMDYCTFLTDQC
KITVTRKAFDSALRALPITQHHRIWPIYLNFLKKHDIPETAVRVFRRYLKLCPEDTEEYI
DYLISINKLDEAALKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDKIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKPNPSEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYEKNEQIEDARVIFEKATQ
VMYAKVDDLASVWCEWAEMEIRHENYEEALKLMQKATVLPSRKVAYHDDTETVQMRLHKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EDHGLARHAMSVYERATIAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPEEK
AREMCVRFSEMETKLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVQNKG
NIMFVRGETQGLKESSEKVVNPDEIDIDDENSENSDEDDGEVAPVQKKEIPAAVFGGLVP
ETK
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcttggacggaaaagaaattgacatctttttcagtgaagaagatttaccatat
gaagaagaaatattgaggaacccattttctgttaaacattggcttcggtatatagagcat
aagaaaggagcccctaaaaatgaaattaatatgatatatgagagagcactaaaagagttg
ccaggatcattcaagttgtggtataattatctgaagctcagaagaagccaaattcgtggc
aggtgtataactgatccttgttatgaagatgtgaacaattgctttgagagatctcttgta
tttatgcacaaaatgccaaggttatggatggattactgcacttttttgactgaccaatgc
aaaataacagtaacaagaaaagcatttgacagtgctttgcgagcattacccattactcaa
caccatagaatatggccaatatatctgaattttttaaagaaacatgatattcctgaaact
gctgttagagtatttagaagatatttgaaattatgtcctgaagacactgaagaatatatt
gattatttaatatcaatcaacaaattagatgaagccgccctgaagttggcccaaattgtt
aataatgaaaattttcagtctaaacatggaaaatcaaatcatcagttatggaatgagtta
tgtgaattaatatcaaaaaatccagataaaattcattctttgaatgtagatgctattatt
aggggtggtctcagaagatacaccgatcagctaggtcatctttggaactctctggcagac
tattatgtgagaagtgggctttttgaaagggcaagggatatttatgaggaagccatacaa
actgttactactgttagggatttcacacaggtatttgatgcatatgcacagtttgaagag
ctaagcttaagcaaaaaaatggaagaagttgctaaaaagcccaatccttctgaagatgat
gacattgacttagaattaagacttgcaagatttgaatatctcatggaaagacgactttta
cttctcaattcagtattactgagacagaacccacacaatgttgctgaatggcacaagaga
gttaaactgtatgaaggcaaacctcatgaaataattgatacttatactgaagctgtgcaa
acagtagatcctaaacttgctgttggaaaactttacactttgtgggtaggttttgccaaa
ttttatgagaaaaatgagcaaatagaagatgcaagagttatttttgagaaagcaactcaa
gtcatgtatgccaaagttgatgacttggcttctgtttggtgtgaatgggctgaaatggaa
ataagacacgaaaactatgaagaagcacttaaattaatgcaaaaagcaactgttttgcca
agccgaaaagttgcttaccatgatgatacggaaacagtacaaatgcggcttcacaaatct
ctgaaagtgtggtcaatgtatgcagatttagaagaaagttttggcacatataaatcttgc
aaagctgtctatgatcacattattgatttaaagatagcaactcctcaaattataattaac
tatggattatttttagaagaaaataattactttgaagaagcttttagagcttatgagaaa
ggaatagctctatttaagtggccaaatgtgtatgatatatggaatacctatctgactaaa
tttttaaagagatatggaggctcaaaacttgaaagagcaagagacttatttgaacaatgt
cttgaacattgtccacctgaatttgcaaaatcaattttcctattatatgctaaattggaa
gaagatcatggattagcaaggcatgccatgtcagtttatgagcgtgctacaattgcagtt
cttcctgagcaaatgtttgagatgtttaatatctatatcaaaaaagctgccgaaatttat
ggggttcctaaaactcgccaaatttatgaaaaagcaatcgaaacattacctgaagaaaaa
gctagagaaatgtgtgtaagattctctgaaatggagaccaaactaggtgaaattgaccga
gctcgcgccatctatgcccactgtagtcaaatgtgtgatccaagaataactgcagatttt
tggaatacttggaaagagtttgaagtaagacatggtaatgaagacacaatgcgtgaaatg
cttagaataaagagaagtgtccaagctacttataatactcaagtaaatatgatgtcagct
caaatgttgagttctgcagctcaagctgctggtacagtttcagaccttgctccaggtatg
aaagatggaatgagaatgttggaagcaaaagctgctgaaatggctgttcaaaataagggc
aatattatgtttgttagaggtgaaacacaaggtctcaaagaaagttctgaaaaagttgtt
aatcctgatgagatagatattgatgatgagaattcggagaatagtgatgaagatgatggg
gaggtagcaccagttcagaaaaaagaaataccagctgctgtgtttggtggcttagttcca
gagacaaaataa
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