Amyelois transitella (navel orangeworm): 106129054
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Entry
106129054 CDS
T09957
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03013
Nucleocytoplasmic transport
atra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106129054
03015 mRNA surveillance pathway
106129054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106129054
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106129054
mRNA cycle factors
P-body specific factors
106129054
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
106129054
NCBI-ProteinID:
XP_013182945
LinkDB
All DBs
Position
2:complement(join(10434683..10434857,10435093..10435238,10435379..10435528,10435826..10436869,10437072..10437287,10437512..10437806,10438101..10438240,10438688..10438939,10439294..10439506,10439607..10440302))
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AA seq
1108 aa
AA seq
DB search
MTSTEQGISTEKTEEDATANTEDNEKAVLMEYISNLEARIKQKTEMRNLNLTCVRPPENH
FSKLDSGLKKNTTFVKKLKSFSATQMDTLLKDFSVLNLTKYISEVAAAIAEAKLKMSDIP
AAINICSVLHRTYTDFSSNFFENWQKILTFKATDKITNSSKLRVDIRFYAELVAVGIFAN
KTGLPLLGNVLTVLINMDKEEHNNIPILLSFCKHCGEDYAGLMPKKIRETAEKLSITVPR
NTFLPAEKQTVVRTLLKDYFMSLTKHLLAVKAQLQALHAANQRTLHTRGELSQERKDQLE
LHQATYDKLLGGAQSFAEVLGEELGEAGEPPTLSLVVTETQGTVSIGGTEEFNMQAGTDP
WQDEDTRTFYTCLPDLKVFMPNYQPKETVKNKTEVTEEMLDEDLKEDELSDSEDPPTVTD
VEQEESQPSNISNKYALDAFLNELPNCINRELIDNAAVDFVLNLNTKNNRKKLTRVLFSV
ARTRLDLLPFYSRFAAILYPVLPDVCVDLCQMLKQDFKYHVRKKDQINIESKIKVVRFIG
ELVKFGLYSKMEALYCVKVLLHDFKHHHIEMACNLLETCGRFLYCNPDTHQRTMIYLQQM
MRKKTVSALDSRYVTQIENAFYYVCPPEAPAQPKEEEPPMHQFIRKTLHEDLQKSNEEKI
LRLMRKLNWDDPEISAVAIQHLAGGWRVRASARRALARLTAELAVWQEVVAPAVVDTIIE
EIRVTMEDPHPKYNQRRIATVRYLGELYNYKLLDSRDVFTVLYSFITFGVTNDHSNVSPL
DPPDNVFRIRLVCALLETCGAYFNSGSSKKKLDYFLVFFQNYYWFKYSDPHWTEENKFPI
YVKYIYQECLSTLRPKLVLFTSWQQCKDAIEELRQTLYPELGEEEQYDEDQGDDSANDGL
DTIMETDDETDNPNLPEESSEDEPITENTANDDNDLQPEDLAIEPRRPNPKPVEDTEFET
AFEKMVMENIAERQRESRPQQRDIAVPVTCRQATKKTYEQLLQGEQGVEFVLMVRKGTKP
QYKSFSAPPELASNLQQQALADKQEMERVKRLTLNISERQEEEEYSAESGGGSGGSGNPN
RGLHVRQKYQHPKGAPDADLIFGPKKFK
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgacagagcaaggtattagtacagaaaaaactgaggaagatgctaccgcaaac
accgaagataatgaaaaagctgttctcatggaatatattagtaatctagaggcgcgaatc
aaacaaaaaactgaaatgcgaaatctgaatttaacctgtgttcggccacctgaaaatcat
ttctctaagttggattctggtctgaagaaaaataccacatttgtaaagaaactgaaatct
tttagtgcaactcaaatggatactcttttgaaagactttagtgtattaaatttgacaaaa
tatatatctgaagtagcagcagcaattgccgaagcaaaattaaagatgtctgatattccg
gctgctataaatatatgttctgttcttcatcgcacttacacagatttctcatcaaacttt
tttgaaaattggcaaaagatactgactttcaaagctacagataaaatcacaaattcctca
aaattgcgtgttgacatacgattctatgcagagcttgttgcagtgggaatatttgcaaac
aaaactggtttgccactgttgggtaatgttctcactgttcttattaatatggacaaggaa
gagcacaacaatatcccaatattactgtctttctgcaaacattgtggtgaagattatgct
ggtcttatgccaaagaaaatcagagaaactgcagagaaactcagtataacagtgccaagg
aacacatttttgccagcagagaaacagactgttgtgcgaacattattgaaggattatttt
atgtctttaaccaaacacctgttggccgtgaaagcacaactacaggctctgcatgcagcc
aatcagcgcacgttacataccaggggagagctgtcacaagagaggaaagatcaattagaa
ttgcatcaggcaacctatgacaaattgttgggtggtgcccaaagttttgctgaagtctta
ggggaggaattgggagaggctggtgaaccccccactctgtctctggtggtgacagagacc
caaggcacggtcagcattggcgggactgaggagttcaatatgcaagctggcacagatcct
tggcaagacgaagatactagaacattctatacgtgcttgcctgacttgaaagtgttcatg
cctaactatcaacctaaggagactgtaaagaataaaacggaagtaacagaagagatgttg
gatgaagacttgaaagaggacgaactcagtgacagcgaggatcctcccactgtgacggat
gtggaacaggaggagagccaaccatctaacatttctaataagtatgcccttgatgctttc
ctaaatgaattaccaaattgtataaatagagaactgatagataacgctgccgtagatttt
gtgctaaacctcaacactaagaacaatcgtaaaaagctaacaagagtcttgttcagcgtt
gccaggactagacttgatttgttaccattttactcaagattcgcagctatattgtatccg
gtgttgccagatgtctgtgtagatttatgccaaatgctgaaacaagatttcaagtaccat
gtgaggaaaaaggatcaaatcaacattgaatcaaagataaaagtagtcagatttatagga
gaactagtgaaatttgggttgtactcgaagatggaagcgttatactgtgtaaaagtgttg
ctacacgacttcaagcaccaccacatcgagatggcttgcaatttgctggaaacctgcggg
aggttcctgtactgcaatcctgacacacatcaacggaccatgatctatttacaacaaatg
atgaggaaaaagaccgtgtcagctctagattcccgttacgtgacacagatagaaaatgcg
ttttactatgtctgtccacctgaagcgcctgctcagcctaaagaagaagagccaccaatg
caccagttcatcagaaagacacttcacgaagacctacagaaaagtaatgaggagaagatt
ctaagattaatgcgcaagttgaattgggatgaccctgaaatatcagctgttgctattcag
cacttggccggtggttggagggttcgggctagtgccagaagggccttagctcggctcaca
gctgaactagcggtttggcaagaagtagtggcacctgctgtggtggacaccatcatagag
gaaatacgagtaacaatggaagatccccatcccaaatacaaccagagaagaatcgccacc
gtcagataccttggagaactgtacaattacaaattactggattcccgcgacgttttcaca
gtcttgtactcctttatcacttttggagtgaccaatgaccatagcaatgtgtctccatta
gacccgcctgacaatgtgtttaggataagactggtatgcgcgttgctcgagacttgcgga
gcgtattttaatagcggctctagtaagaagaaactggattatttcctagtattcttccaa
aactattactggttcaaatattcggatccccattggactgaagaaaataagtttcctatt
tacgtgaaatatatttatcaagagtgtttgtcgacgcttaggccgaagctggtgctattt
acgagttggcagcaatgtaaagatgccattgaggagctgcgacagactttgtaccctgag
ttgggtgaagaagaacaatatgatgaagaccagggcgatgatagtgctaacgatggactt
gacactataatggagacggatgatgaaactgacaaccctaacctgcctgaagaaagctct
gaagatgaacccataacggagaacacggcaaatgacgataatgatttgcaacctgaggat
ttggctattgaacctagaagaccgaatcctaaacctgtagaagatacagaatttgaaact
gccttcgagaaaatggtgatggagaacatagcagagaggcaacgtgaaagcaggccccag
cagagagatatagccgtgccggtcacatgcaggcaggccactaagaagacctacgaacag
ttgctgcaaggggagcagggcgtggagtttgtgctgatggtcaggaaagggactaagccg
cagtacaagtctttcagcgccccgcctgaattggcgagcaacctgcagcaacaagccttg
gctgataaacaagagatggagagagttaaaagattgacactgaacatatcagagaggcaa
gaagaggaagaatacagcgctgaaagtggcggcgggtcgggtggaagcggcaaccctaat
aggggattacacgtgcgacagaagtatcaacatccgaaaggtgctccggacgccgacctc
atttttggacctaagaaatttaaatga
DBGET
integrated database retrieval system
