KEGG   Amyelois transitella (navel orangeworm): 106129172
Entry
106129172         CDS       T09957                                 
Name
(RefSeq) DNA repair endonuclease XPF
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03420  Nucleotide excision repair
atra03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    106129172
   03460 Fanconi anemia pathway
    106129172
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atra03032]
    106129172
   03400 DNA repair and recombination proteins [BR:atra03400]
    106129172
DNA replication proteins [BR:atra03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    106129172
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     106129172
SSDB
Motif
Pfam: ERCC4
Other DBs
NCBI-GeneID: 106129172
NCBI-ProteinID: XP_013183116
LinkDB
Position
14:join(781735..781856,782378..782530,782880..783060,785627..785739,786267..786432,787746..787882,788988..789142,790174..790601,790943..791254,792381..792477,793455..793570,794784..794957,795834..795974,796249..796443,796975..797142)
AA seq 885 aa
MDNNETATLPVNKDYKYPLLTFEKQIFIDVFEKDSLLIMAKGMSYNNILSNLLWVYKDPE
NLVLVLNSSDHEEKYFTDQFSLVPLPNLGSEREKAYLEGGVHFVSTRILVVDLLKKRVPI
SHITGIIVLRAHTVLESCQEAFALRLYRQSNKTGFIKAFSNSPISFTFGYHQVEKVMRAL
FVTELFLWPRFHGVIIQDLKCRQPPVIELHVDLTSNMDQIQTCLLDIMNYTVRQLKTVNR
TLDMREITTENCMTKKFHKILQSQLDCVWHQLSTRTKEYIQDLKVLRSMIINLIHDDSVS
FYALVSKYRSPEYAKMNSGWILLDSAEHLFRAAKARVYNHKNEFDPEPSPKWKCLSDLLA
NEIPEEVKKKNNGNLNNTKILILCQDGRTCSQLNHYLTMGGNKYLFYMAFRRDLTVNTLS
SKYKKLKPPDSVKAKEKADVTDAENDDDDDAFDDAKSNYVLTLTQVPECKKREPQNDSVF
ESLSQMENLDITQIETEKPLIFIQTFKENGNNFSLTHTLQTLKPDYIVLYHSDVSAVRQI
ELSECRKGGHETACKVYLMIHDRTVEEQAYLTSLKREKQAFELLIETKSVMVVPSYQDGK
TDEYFNLNVEEEDENVDTRKAGGQGQKEKPMVIVDMREFRSDLPALLHKKGVTIEPVTIA
IGDYILTPDICVERKSISDLIGSLNSGRLYTQCTQMCRNYSRPILLIEFDQNKPFNLQGH
LVVSSDMSGADVQQKLQLLTIHFPRLKLVWSPSPYATAELFYELKQNRKNPNIAEALALS
GDHTAEDMHYERYNISVHDFVQKLPGVTSKNITRIMNRGVSLDHLITLSKEEIAKITENK
NEADTLYSILHIEAKPSDAGKDDKSYGKKRNAGKPLFRSKKREQT
NT seq 2658 nt   +upstreamnt  +downstreamnt
atggataataatgaaacagctaccttgcctgtgaataaggattataaatatccgttatta
acatttgaaaaacaaatatttattgatgtgtttgagaaggattctctacttattatggcc
aaaggtatgagctacaacaacattttgtctaatttgctatgggtgtataaagaccctgaa
aacttagttctggtattaaacagcagcgaccatgaggagaaatatttcactgatcagttc
agcctggtgccattacctaaccttggttctgaaagagaaaaagcctatctggagggcgga
gtccattttgtgtccacaaggattctggtagtggacttactgaagaaaagagtgccaata
tcccacatcaccggtattatagttctcagagcacacacagttttggagtcatgtcaagaa
gcatttgctctaagactttataggcaaagcaataagacaggattcatcaaagcattttca
aattccccaatatctttcacatttgggtatcaccaagttgaaaaagtgatgagggcgctg
tttgtgactgaactgttcttgtggccaagattccatggcgtcataattcaagatctgaaa
tgtcgccagccgccagtaatagagttgcatgtagacctgacttccaacatggatcagatt
caaacctgccttctggatattatgaactatacagtaaggcagctcaaaactgtcaacaga
accctggatatgagggaaataactacagagaattgtatgacgaagaagttccacaaaata
ttacaatctcagttggactgtgtgtggcatcagctcagcacgagaacaaaggaatacatt
caggatctgaaagttcttaggagtatgatcatcaatttgattcacgatgactctgtatcg
ttctacgcgttagtatcaaagtatcgcagtccggagtacgccaaaatgaattccggttgg
atcctactggactccgctgaacacctcttcagggcggccaaggcaagagtgtataatcac
aaaaatgaattcgacccagaaccatcgcctaaatggaaatgcctcagcgatttgctagcc
aacgaaataccagaagaagttaagaaaaagaataatggtaacttgaacaataccaaaata
ctcatactgtgtcaagacggcagaacttgttctcaactaaaccactatttgacaatgggt
ggtaacaagtacttattttacatggcgttcagaagagatttgactgtgaacactttgtct
tcgaaatacaaaaagttgaagccgccagactctgtcaaggctaaagagaaggcggacgtg
actgatgcggagaatgatgatgatgatgacgcgttcgatgatgcgaagtcgaattatgtg
ttgacgttgacacaagtacctgaatgtaagaagagagagccacaaaatgatagtgtattc
gaatctttgtctcagatggaaaacttagacatcacccaaatcgaaaccgaaaaaccgttg
attttcatacaaacattcaaagagaacggcaacaatttctcccttactcatactttgcaa
actttgaaacccgactacatcgtattataccacagtgacgtgtccgccgtgcgtcaaata
gagctgtccgagtgccggaagggggggcatgaaacggcatgtaaagtgtacttgatgatt
cacgacaggaccgtggaggagcaggcgtacttgacctcgctgaagagagagaagcaggcg
tttgagctgctcatcgaaactaaaagcgtaatggtagtaccgtcataccaggatggtaaa
actgatgaatatttcaatctgaacgtggaggaggaagacgagaatgtagacacgaggaaa
gcaggaggtcaaggccagaaggagaagccgatggtgatagtggacatgcgggagttccgc
tctgacctccccgccctgttgcacaagaagggggtcaccattgaacctgtaactatagcg
attggcgattacatcctgaccccggatatatgcgtcgaacgcaagtccatatccgacctg
atcgggtcattgaactccggccgcctctatacgcagtgcacgcagatgtgcaggaactac
agccggcccatactgctcatagagttcgatcagaacaagcctttcaatttacagggccat
ctagtcgtttcctcggacatgtctggcgcggacgtccagcagaagttacagctgctcacg
attcacttcccaagactcaaactggtctggtctccaagcccttacgccaccgcggaactg
ttttacgaactcaagcaaaatagaaaaaacccgaacatagccgaagctttagccttaagc
ggcgaccacaccgccgaagatatgcactacgagcgatacaacatatccgtacacgatttc
gttcagaaactgcccggagtcacttctaagaatataacgagaatcatgaatagaggggtg
tcgttggatcatcttattactttgagcaaggaagagatagcgaagataactgaaaataaa
aacgaggcagatactctttactctattttacatatagaggcaaaaccgtcggatgccggc
aaagatgataaatcttatggaaaaaaaagaaatgctggaaaaccacttttcaggagtaaa
aaacgggaacaaacataa

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