KEGG   Amyelois transitella (navel orangeworm): 106129323
Entry
106129323         CDS       T09957                                 
Name
(RefSeq) collagen alpha-1(I) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:atra00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106129323
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:atra00536]
    106129323
Glycosaminoglycan binding proteins [BR:atra00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106129323
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Herpes_gI
Other DBs
NCBI-GeneID: 106129323
NCBI-ProteinID: XP_060809854
LinkDB
Position
4:complement(join(4694743..4694880,4695260..4695362,4695754..4695869,4696412..4696575,4697251..4697400,4697964..4698222,4698398..4698613,4698796..4698957,4699537..4699806,4700163..4700323,4700531..4700747,4701351..4701493,4701767..4701947,4702103..4702354,4702468..4702674,4702764..4702808,4702895..4703056,4703217..4703314,4703471..4703561,4703823..4703939,4706093..4706290,4706380..4706640,4706851..4706961,4707257..4707331,4707697..4707885,4708606..4708728,4709309..4709421,4709649..4710048,4711313..4711475,4712224..4712383,4713533..4713754,4714444..4714510))
AA seq 1777 aa
MALEMRAKFLLLLFCILGGSADDELEIFDVLSVVRDGGLPEGVLPARGRCQAPNTPYSEF
SAYSLGQNATVHQLAAGMFYNMFPEDFSILAVLRLRDTEQYPVFVLYSDSGDDQLQLIVG
QLVELYYQDTRGDPPDDEMLTFRVNIADGRWHRLGLSIKGDSVTLLVDCEIKGTLLLNRK
PGSTFNLAGALVLGTQVTAEQYYEGDIELLQFTNKPDTAYDICTTIAPDCGTYGTSYRLD
STRVIDDIDDELDFGTNEEINSLILPTTIQPTRDTPHVDGNGRREYGHFGRRRTFNELNR
SDNTWQPNYAELSTPRPNIQFTNFIGVTDSYIPMTDNDENSIFGSFRNEDELLPTSPNIV
DATSPQPLEITTTPRLKRRGDDEAEIYTLVTTESSYTPMTTTEDEDYLTHPPDYGDDNST
GYDSTYYDYGAAGTYFGPRGYPGPPGPQGPRGPKGEPGKPGAEGQQGFTGPPGHVFVVPL
QQSVNEKGPDVQSQALSQMLAQHMAAMRGVDGPMGLTGPPGPEGETGPEGPKGEQGEQGE
PGSFGPRGPQGPPGGAGRRGHPGRDGERGSTGATGPKGDVGYPGLPGIPGDKGERGVPGQ
QGEPGTPGQDGPPGDDGPPGPPGLSGELGPRGFMGPRGFPGLIGYPGLPGIEGPQGAKGL
SGQPGPPGPQGQSGPMGPAGSSGPQGPMGSPGIQGPQGKPGISGLPGPEGSPGTPGNPGQ
QGSPGEPGPQGPQGMLGFPGPRGLKGDDGPRGLPGDKGDKGPRGIEGEKGDMGPKGERGL
PGEAGPAGIEGPEGQKGAEGLRGETGSVGPAGEKGFTGPQGPQGYPGIQGEKGDKGASGR
RGRRGAKGPAGLIGNPGDRGETGPRGYRGPRGRRGSDGAPGPKGDTGQPGPPGLTGERGP
QGLEGVRGFPGALGPPGPDGKPGMPGPPGERGPTGDPGAVGQSGPPGATGPQGPVGEAGP
QGPPGAAGVPGIPGEVGAPGEMGKEGPPGPPGPEGKPGPVGSTGPPGHQGETGLPGTPGA
PGSKGDLGPPGPPGARGDKGEQGESGHEGLQGPQGREGPRGSPGPGGQKGEIGEPGPLGP
IGRDGLPGPRGLAGTPGPIGPPGEDGDKGEAGPPGEKGFKGAAGEPGPQGSPGIQGLRGE
SGPVGLPGDKGPQGEPGPPGLHGADGVRGLPGPAGPIGLQGEKGQQGLSGDKGDIGPTGP
TGPVGPTGQPGRRGPKGSPGEPGPRGAEGQPGDIGSPGAPGSPGPIGPEGIQGPRGSVGP
KGDDGPPGQQGEPGTIGHPGPEGPKGDPGGIGLPGERGETGPQGIKGEPGPDGPEGSNGP
PGPPGPIGPPGKPGETGIPGNPGTEGAAGTQGSPGVPGEKGDMGPKGSTGEPGPPGPIGP
PGQEGQQGIRGQAGPAGDVGPPGAVGVPGPTGKQGPVGNPGPRGEKGNRGPKGHIGDTGP
SGLKGDQGDTGKQGLPGPPGPVGPKGDMGPMGPPGPKGDTGPAGLTGPEGPTGPKGNTGP
EGRPGQPGPPGTPGPPGPPAPLQIPEELLNSLNRRRRSIETNYMETATEDDIEEDEELEW
MKEIMTGIVTARSAIEAVNRPRGTRDNPALSCRDLRSTHVNFTDGYYWIDARGGGAGGRP
LRVYCKGQNTCVFPDNAEQVVYTAGTNTQKFSQLYSGYRVSYEGEGSGAVQLRFLRLLSN
VAKQNFTYTCIDAKAIQRADIPPEVTRLNNVKLFGYNSAEFKEPILIKDECKEGFGEIVL
EIKTSRSERLPITDFQPLSFVDAEHQFTFNVGPVCFT
NT seq 5334 nt   +upstreamnt  +downstreamnt
atggctcttgagatgagagcaaaatttcttctcttattgttttgcatactcggcgggagc
gcggacgatgaactagaaatcttcgacgtattatcagtagtgagagatggcgggctccca
gagggagtgttgcccgcccgcggtcgctgccaggcccccaacaccccgtactcagagttc
tctgcctacagcctcggccagaacgccacggtgcaccaactcgctgctggaatgttctac
aacatgttcccagaggacttctctattctggctgttttgaggctacgagacactgagcaa
tatccagtatttgtgctttactcggactccggtgacgatcagctgcagctcattgtgggg
cagctcgtcgagctgtactaccaggacacgaggggcgacccacctgatgacgaaatgttg
acgttcagagtcaatatcgctgacggaaggtggcaccgattgggtcttagcataaaaggc
gactcagtaactttactggtggattgcgaaattaaaggaacccttttgttgaaccgaaag
ccagggagcaccttcaacttggcaggcgctttagttttaggcactcaagtgacagcagag
caatattatgaaggtgacatcgagctgctacaatttaccaacaaaccagacacagcctac
gacatttgtactacaatagctccagattgtggcacttacggaacttcatacagattagat
tctactagagtaatagatgatattgatgatgaattagattttggcacgaacgaagaaatc
aatagtcttattttaccaaccacaatacaaccaacgcgtgacacgccacatgttgacgga
aacggcagaagggagtatgggcattttggacggagaagaactttcaacgaactcaacaga
tccgacaacacttggcaaccaaattacgcagaacttagtaccccgcgaccgaatattcaa
tttacaaattttataggggtaacagactcatacattcccatgacagataatgatgagaac
agcatctttggcagttttcggaacgaagatgaattactgccgacctctccaaacattgtc
gacgctacatcaccccagcctctggaaataaccacgacaccaaggctaaagagaaggggc
gatgatgaggcggaaatatatactcttgtgactactgaatcttcttacacaccaatgaca
accactgaagatgaagactatctcactcatcctcccgattatggcgatgataattccact
ggatatgattcaacatactacgattacggagccgctgggacatattttggaccccgtggg
tatccggggccaccagggcctcaggggcctagggggccgaaaggggaaccgggcaaaccc
ggagcagaaggacagcaaggatttactggaccaccaggccatgttttcgttgttccatta
caacaatcagtaaacgagaaagggcctgatgtacagtcccaagcgttgagtcagatgtta
gcacaacacatggctgctatgcgtggtgttgatggcccgatgggtttgactggacctcca
ggacctgaaggggaaactgggcctgaaggacctaaaggagagcaaggcgaacagggggaa
ccaggatcttttgggccaagaggaccccaaggccccccgggtggagcaggccgtcgaggt
caccctgggagagatggggaacgagggtcaactggcgcaacgggtcctaaaggcgatgtt
ggttatcctggactacctggcataccaggggataaaggagagcggggagtaccgggacag
cagggtgaaccgggaactccagggcaggacggcccgcccggggacgatggtccgccaggg
ccacctggtttatcaggagaacttggtccaagaggattcatgggacccagaggttttcca
ggcttaataggttatccaggattacctggtattgaaggaccacaaggagctaaaggtttg
tctggacaacccggtccacctgggccacaagggcaatcgggtccaatgggaccagcaggc
tcctctgggcctcaaggaccaatgggctcaccaggaattcagggtcctcaaggcaaacct
ggcatttcgggtcttccgggaccagaaggatcaccaggaacacccggcaaccccgggcaa
caaggatcgcctggagaacccggaccacagggacctcaaggtatgctaggatttcctgga
ccacgtggattaaaaggagatgatgggcctcgaggcttaccaggcgataaaggcgacaaa
ggtcctcgaggaatcgagggtgaaaagggtgatatgggcccgaagggagaacgaggttta
cctggagaagccggaccagctgggatagagggtcctgaaggacaaaagggtgctgagggt
ttaagaggtgaaactggctctgtagggcctgctggtgaaaagggatttacaggaccacaa
ggaccacaaggctaccctggcattcaaggggaaaagggagataaaggagcatctggtaga
cgtggaagaagaggagcaaaaggcccagcgggcttaataggaaaccctggtgatcgtggt
gaaactggaccaagggggtacagaggaccaagaggtagacgtgggtccgatggagctccc
gggcctaaaggagatacaggacagccgggccccccagggctaacaggagaacgaggtcct
caaggcttggaaggcgttcgaggattccctggagctctaggcccgccaggccctgacggg
aaaccaggcatgccaggtcccccaggggaacgtggaccaacgggagatcctggggcagtt
ggccagtctggtcctccaggtgcaacaggacctcaaggacccgtgggcgaagctggacca
caaggaccacccggtgcggcaggggtaccgggaatcccgggagaagttggtgctcctggg
gagatggggaaagaaggcccgccaggaccgccaggacctgaggggaagcctgggccagtg
ggctcaacagggccgcctggacatcagggagaaacgggattgccgggaactccaggtgcc
cctggatccaaaggcgatctaggcccacctggccctccaggggcaagaggtgataaaggg
gagcaaggtgaatcggggcatgaaggtctgcaagggccacagggacgtgaagggcctcgg
ggctcaccaggacctggcggacaaaaaggcgagattggagaaccgggtccattaggtcca
attgggcgagatggtcttcctggacccagaggactagcaggtacaccggggccaataggt
ccaccaggtgaagatggggataagggagaagctgggccacctggagaaaagggttttaag
ggagcagctggtgaaccaggcccacaaggatctccgggaattcaaggcctgcgaggagaa
tcgggtccggtgggcctgcctggggataaggggcctcagggtgaacccggtccaccaggc
ctccacggcgcagacggagtgagggggcttcctggaccagcggggccaataggtctacag
ggagaaaagggtcaacaaggcctatcaggagataaaggcgacatcggacctacgggtcca
acaggccccgtaggacctaccggacaaccaggtagacgtgggccaaagggatctccaggc
gagccggggcctagaggtgcagaagggcaacccggagatataggtagtcctggtgcacct
ggatctccagggcccataggacccgaaggaatacaggggcctcgaggatcggtggggcca
aaaggtgacgatggtcccccaggacagcagggcgaaccagggactattggacatccgggt
cctgaagggcctaaaggagatccaggaggcataggcttgcctggagaacgaggggaaacc
ggcccacaaggcatcaagggggaaccaggacccgatggtcccgagggcagcaatggtcct
ccaggccctccaggacccataggcccacccggaaaacctggggaaactggaataccggga
aatcctggaactgaaggagcggctggtactcaaggcagcccaggagtacctggtgaaaag
ggcgacatgggcccaaagggttctaccggagaacctggcccgccaggtccaatcggacct
cctggacaagagggacagcaaggaattagaggacaggcaggacccgccggcgatgtaggt
cctcctggtgcagtaggggtaccgggtcctacaggcaaacaagggccagttggtaatcct
ggtcctagaggagaaaagggcaatagaggacccaaaggacacattggagatactggacct
tcgggtttgaaaggcgatcagggtgacacgggaaaacaaggtttacctggaccaccgggg
cctgttgggcctaaaggagatatgggtccaatgggtccgccagggcctaaaggggatact
ggtccagccggtttgactgggcctgaaggacctacaggtccaaaaggcaatactggtcca
gaaggtagaccgggccagccggggccgccgggaacccctggcccaccaggaccgcccgcg
ccactacaaattcccgaagaactccttaattctttaaatagacgacgaagaagcattgag
acaaattacatggaaactgctacagaggatgatattgaagaagatgaagaattagagtgg
atgaaggagatcatgactggcatagtgactgctcgttctgcgattgaggcagtgaaccga
ccacgtggaaccagagacaacccagctctctcatgccgggacttgagaagcactcatgtc
aatttcaccgatggatactactggatagacgcgcgagggggtggtgccggcgggcgacct
ttacgtgtgtactgcaaaggacaaaacacctgcgtcttccccgacaacgctgaacaagtt
gtgtacactgcgggcacgaacacacaaaagttctcgcaactttatagtggataccgggtg
tcttacgaaggtgaagggtccggcgccgtacaacttcgattcctgaggttattgtcaaat
gttgcgaagcaaaattttacgtacacttgtattgatgccaaagctattcaaagagctgat
ataccgccagaagtgacaagattaaacaatgtaaaactgtttggctacaactctgctgaa
ttcaaggaaccaatcttgataaaagatgagtgcaaggaaggattcggtgaaattgtgctc
gagataaagacatcaagaagtgaaagactgcccataacagacttccaaccgctgtcattc
gtcgacgccgaacaccaattcacatttaacgtgggccccgtttgcttcacgtga

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