Amyelois transitella (navel orangeworm): 106129683
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Entry
106129683 CDS
T09957
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atra03041
]
106129683
Enzymes [BR:
atra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106129683
Spliceosome [BR:
atra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106129683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
R3H
Helicase_C
Ank_2
DEAD
YTH
Ank
AAA_19
nSTAND3
Ank_5
Ank_4
AAA_22
AAA_25
HA2_N
AAA_14
T2SSE
SRP54
Cas3-like_C_2
PhoH
UvrD-helicase
NACHT
ATPase_2
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
106129683
NCBI-ProteinID:
XP_013183775
LinkDB
All DBs
Position
16:join(7681061..7681319,7681492..7681718,7682346..7682447,7683070..7683216,7683551..7683698,7684067..7684214,7684576..7684751,7685362..7685492,7685902..7686043,7687746..7688242,7688603..7690369,7690706..7690836,7691433..7691595)
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AA seq
1345 aa
AA seq
DB search
MVDVNRKKSGLFFNKMSSKKGKRNLGNKHFPIAESVSIALKIQLDKFLSDENETELKFPT
FLSAQERGFIHETVAKLGLKSKSRGKGVNRYLTIYKRLGSTIIQNDAKLILDSNMRCSIA
ELSNAFPITNKEKDDLSCCPEKERSPQLAHKTLGQLNNGVAQIPNTTYNPDLVKFRDKLP
VYEQRQELINAITHNQVIIVAGATGCGKTTQLPQLVLDYCQEHKQPARIYCTQPRRISAV
SVAERVAYERMEKIGQSIGYQIRLESRVSPRTVLTYCTNGVLLRTLMQGDSALTGVTHVF
VDEVHERDKFSDFLLIALRDALPRLKDLKLILMSATMDTQIFSRYFNNCPVMTIPGRMFE
VQRYFLEDILKITQYRTKKMIAVEHELRAKLKQGNSYWSHLEGQKNKEDATAGSSKEKEE
SEDKVDPALQADMDEFLEDCFRDGSLDSFCQILYMYLSEGVPVNCGQSGSRRCGLMAAAA
HGLADTARQMLAMGADPTCKDKDGKTAYDYAVEKGHTDCAKLLASYNHAEETKENNDEEN
AADAFLLDVYHHAVSEELIDHDLMLALIKHIHLNLPKGSILVFLPGYDDIVTLRDLIQGC
AEMNTSKYQIFTLHSNMQTIDQKKVFNPLPNARKIIISTNIAETSITIDDVVYVVDSCKV
KEKYYESSGGVCSLQRVWASRAGAAQRAGRAGRLQPGRCFHLASRRRLAALPAAAPPEML
RVPLQELCLHTKLLAPPNTPVADFLARALEPPSFLAVRNAVALLKTIGALTPVEDLTEIG
QHLLDLTVEPKLGKMLLYACVMKCLDPILTIVCGLANKEPFQISMNPEHRKRGSAARKEF
AADSYSDHMALLRAFQAWQTARANGTERAFCAKNLICGATMEMIVGYRSQLLAQLRALGL
VKARGSGDIKDVNLNSEKWHVVKAVLVSGLYPSIARVDRDSGTLRTSKEVKVAFHPSSTL
HRGGSAAASAKSVQALPTDWIVFEEISRAGRFCFVRTCTLVTPLTVALFGGPLRLPAGAL
TQRANPPGLSSDSDSEADERNASPDAAVLALDDWTAFTADASDAISVYYLRQKLCALVVR
RMSNPAKPMTPLDEQILSTVVHVLGAEEKNVGLSQPSGIGQRPKPLTVDSPNWRTRMDEE
QRHDNKYYPQYAQNEYPGNAFYQNAYGYRNGQARPGPWRGDGQSAAPRSPLSPGGRALLA
PGERLAEGEAVRFVVAKVDDLAGLDAAHRTNSFPFSPPTAKKLQKFKQEGNQVVVFFSCA
SVSKFVGSAAITDTNCSLEWLSTQHVPYQTIRNSVAYGARTIGARDGTELCAAAGAALQH
ALLRRRAHAHPHPRPIQKHQAQGEQ
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgtgaataggaagaaaagtggtttatttttcaataaaatgagttctaaaaaa
ggcaagcgtaatttaggtaataagcactttccaatagcggagtctgtgagcatagctctc
aagatccaattggataagtttcttagcgatgaaaatgagacagaattgaaattcccaaca
ttcctatccgcccaggagaggggttttatacacgaaactgtcgccaaattgggcctcaag
tcaaaatcccgcgggaaaggggttaatcgctacttgacaatatacaagcggttgggctcc
acaattatccagaatgatgctaaacttatccttgattccaatatgcgatgtagtattgcc
gagttgtcaaatgcatttcctattacaaacaaggaaaaggatgatcttagctgttgtccg
gagaaagagaggagcccacaattagctcataaaacacttggacagttaaataatggagtt
gcccagataccaaacacgacatacaatccagacttggtaaaattcagggataagttgcct
gtatatgagcagagacaagaactcattaatgccatcactcataatcaggtgataattgta
gctggtgcgacggggtgcgggaagacaacacagctgccgcagttggtgctagattactgc
caggaacacaagcagcccgcccggatatactgcacccagcccaggaggatatccgcagtc
tccgtggcggagagggtggcatacgagcgcatggagaagattggccagtccattggctac
cagatccgcttggagtcccgagtgagtccccggaccgttctcacgtactgcaccaacgga
gtgctactgcgcactctcatgcagggagactctgctcttactggcgtaacgcacgttttc
gtggacgaagtacacgaacgtgacaaattcagcgatttcctgctgatcgctctccgggac
gcgctcccgagacttaaggacctcaagctgatcctcatgtccgctacaatggacactcag
atattctccagatacttcaacaactgtccagtgatgactatcccaggtcgcatgttcgaa
gtgcaacgctacttcctggaggatattttgaagataacacagtaccggaccaagaagatg
atcgcggtggaacacgagctgagggccaaactcaagcaggggaacagttattggtcgcat
ctcgaaggtcaaaagaataaagaagatgcaaccgcaggcagcagtaaggagaaagaagaa
tccgaagataaggtggatcccgcactgcaagctgatatggatgagttcttagaggattgt
tttagggacggaagcttggactcgttctgccaaatcctatacatgtacctgtcggagggc
gtgcccgtgaactgcggccagagcggctcgcggcgctgcgggctcatggcggccgccgcg
cacgggctggccgacacggcgcgccagatgctcgccatgggtgccgacccgacttgcaaa
gacaaagacggcaaaacagcctacgattacgccgtcgaaaaaggccacaccgactgtgcc
aaactactagcgtcttataaccacgcggaggaaactaaagagaataacgacgaagaaaac
gcagctgatgccttcttactcgacgtataccaccacgccgtctccgaagaacttatagac
cacgatttaatgctagctttgattaaacatattcacctgaacttaccgaaaggcagtatt
ttagtctttcttcccggatacgatgatatcgttacgctcagagatttaatccagggttgt
gcagaaatgaacacgtcgaaataccagattttcacgttacatagtaatatgcagacaata
gatcagaagaaggtgttcaatccgctgcccaatgccaggaagatcatcatatcaacgaac
atagcggagacctcgatcacgattgatgacgtcgtgtatgtggtggactcatgcaaggtg
aaggagaagtactacgagtcgagcggcggcgtgtgctcgctgcagcgcgtgtgggcgtcg
cgcgcgggcgcggcgcagcgcgcgggccgcgcgggccgcctgcagccgggccgctgcttc
cacctggcgtcgcggcgccgcctggccgcgctgcccgccgccgcgccgcccgagatgctg
cgcgtgccgctgcaggagctgtgcctgcacaccaagctgctggcgccgcccaacacgccc
gtcgccgacttcctggcgcgcgcgctggagccgccctcgttcctggccgtgcgcaacgcc
gtggcgctgctcaagaccatcggcgcgctcacgcccgtggaggacctcacggagatcggc
cagcacctgctcgacctcaccgtcgagcccaagctcggcaagatgctgctgtacgcctgc
gtgatgaagtgcctcgacccgatcctgaccatcgtgtgcggcctcgccaacaaggagccc
ttccagatctcgatgaacccggagcacaggaagcggggcagcgccgcgaggaaggagttc
gcggccgacagctactcggatcacatggcgctgctgcgggccttccaggcctggcagacc
gcgcgggccaacggcaccgagcgagccttctgcgctaaaaatcttatctgcggcgccacc
atggagatgatcgtcggctatcgctcgcagttactcgcccagcttcgcgcgctcggatta
gtcaaagctcgcggctcgggtgacatcaaagacgtcaatctgaactcggaaaagtggcac
gtggtaaaagcggtactcgtcagcggattgtatccatcgatagcgcgcgtcgatcgggat
tcgggcactttgcggacgtcgaaagaagtaaaggtcgcgttccatccgagctctaccctt
caccgcggcggcagcgcggcggcttcggctaagtccgtgcaagcgttaccaacagattgg
atagtttttgaagagatatctcgagccgggcgtttctgtttcgtgcgtacgtgtacttta
gtgactccgttgaccgtggcgttattcggcggtcctctcagacttcccgcgggagcgctc
acgcaaagagctaatccgcccggattatccagcgattcagatagcgaagcggacgaaagg
aatgcctcgccagacgccgcggtgttggccctcgacgactggaccgcgttcacggcggac
gcgtcagacgccataagcgtttattatctacgacagaagttgtgcgcgttagtcgtccgc
cgcatgtcgaacccggcgaagcccatgacgccgctcgacgagcagattctcagcaccgtg
gtgcacgtattgggcgccgaagagaagaacgtcggtctgagccagcccagcgggatcggt
cagcgaccgaagcctttgacggtggattctccgaactggcgcactcgcatggacgaggag
caacggcacgacaataagtactaccctcaatacgcgcaaaacgagtaccccgggaatgcg
ttttatcagaacgcgtacggttatagaaacgggcaggcgcggccgggcccgtggcggggg
gacggccagagcgcggcgccccgcagcccgctgtcgccgggcggcagggctctgctggcg
cccggcgagcggctcgcggagggcgaggcggtgcgcttcgtggtggcgaaggtggacgac
ctggcgggcctggacgccgcgcaccgcaccaacagcttccccttctcgccgcccaccgct
aagaaactgcaaaagtttaaacaggagggcaaccaagtggtagtgttcttctcgtgcgcg
tcagtgtccaagttcgtggggagcgcggccatcaccgacaccaactgctcgctggagtgg
ctctccacgcaacacgtgccttaccaaactataaggaattccgtagcgtacggcgcgcgc
acgatcggcgcgcgcgacggcacggagctgtgcgcggcggcgggcgcggcgctgcagcac
gcgctgctgcggcggcgcgcgcacgcgcacccgcacccccgccccatacagaaacaccag
gcgcagggggagcagtag
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integrated database retrieval system
