KEGG   Amyelois transitella (navel orangeworm): 106129684
Entry
106129684         CDS       T09957                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03022  Basal transcription factors
atra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106129684
  09124 Replication and repair
   03420 Nucleotide excision repair
    106129684
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106129684
   03036 Chromosome and associated proteins [BR:atra03036]
    106129684
   03400 DNA repair and recombination proteins [BR:atra03400]
    106129684
Enzymes [BR:atra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     106129684
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     106129684
Chromosome and associated proteins [BR:atra03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    106129684
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     106129684
SSDB
Motif
Pfam: DEAD_2 HBB Helicase_C_2 ResIII DEAD AAA_11 nSTAND3
Other DBs
NCBI-GeneID: 106129684
NCBI-ProteinID: XP_013183777
LinkDB
Position
16:complement(join(7694349..7694486,7694912..7695050,7695231..7695301,7695475..7695651,7696206..7696297,7697023..7697110,7697520..7697618,7698362..7698465,7698736..7698803,7699369..7699609,7700073..7700189,7700362..7700495,7700675..7700895,7701030..7701160,7701828..7701930,7702431..7702587,7702824..7702921,7703147..7703246,7703334..7703338))
AA seq 760 aa
MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM
LQNPHHVRKLIYCSRTVPEIEKVLEELKNLIKYYEKSIGEIPNLTGVVLSSRKNLCIHPE
VSKEREGKMVDGKCHSLTASYIRERNEKDPSVPTCQFYEGFQREGKESMLPYGVYTMDDL
KQYGADRNWCPYFLARFAIIHADIIVYSYHYLLDPKIAEVVSKELNREAVVVFDEAHNID
NVCIDSLSVKITRRTIDRSTQALQTLEKTVARLREEDSARLTAEYEQLVEGLREAAAARD
ADAVLGNPVLPDEVLDEVVPGNIRNAEHFLCFLRRFIEYVKTRLRIQHVVQESPAGFLKD
VASRVCIERKPLRFCASRLAALLRTLEVADPSHFSALTLVTHLATLVSTYTKGFTIIIEP
FDDKTPTVSNPILHFTCMDSSIAMRPVFARFQTVIITSGTLSPLDMYPKILDFNPVIMSS
FTMTLARPCILPMIVSKGSDQVAISSKYESREDVAVIRNYGQLLVEIASCVPDGVVCFFT
SYLYLESVVGAWYDQGVVASLQRHKLLFIETQDSAETSFALINYIKACESGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVFTQSRILKARLDYLRDQFQIRENDFLTFDAMRHA
AQCVGRALRGKTDYGIMIFADKRFSRADKRTKLPRWIQEHLKDSLCNLSTEEAVQICKRW
LRQMAQPFTREDQLGVSLLTLQQLQSQEQQEKIERQVIQK
NT seq 2283 nt   +upstreamnt  +downstreamnt
atgaagttaaccgtagacgggttactggtttattttccttacgattatatttatccagag
cagtatgcgtatatgttggaattaaaacgtgctctggatgcgaagggccatggtttgctg
gagatgccttctggaactgggaagaccatatccttgttgtccctcattgtagcctacatg
ctgcaaaatcctcatcatgtcagaaaactaatttactgttcccgtactgtgcctgaaata
gaaaaggtgttagaagaattaaagaatcttattaagtattatgagaagagtattggtgaa
ataccaaaccttactggtgttgtgctcagttcccggaaaaatctgtgcatacatcctgag
gtatcaaaagaaagagaaggcaaaatggtggatggcaagtgccactctctaactgcaagc
tacataagagaaagaaatgagaaggatcctagcgtacccacttgtcaattttatgaaggt
tttcaaagagaaggcaaggaatctatgctcccatatggagtgtacacaatggacgacctc
aaacagtatggcgcggaccggaattggtgtccttacttcctcgcacgatttgctataatc
cacgcagacataatagtttactcttaccattacctactcgacccaaagatagcagaggtc
gtgtccaaagaattaaacagagaagcggtggtagtgttcgatgaggctcataacatagac
aatgtgtgcatagactcgctgagcgtgaagatcacgcgcagaaccatagacaggagcacg
caggcgctgcagacgctggagaagactgtcgccagattacgcgaggaagactcggcccgc
cttacggcggagtacgagcaactcgtggaaggactgagggaagcggccgcagccagagac
gctgatgcggtgcttgggaaccccgtactaccagatgaagtgctggacgaggtagtcccc
ggcaatatcagaaatgcagaacattttctctgttttctaagaagattcatagaatatgtg
aagacaagactgaggatacaacacgtcgtgcaagaatcccctgcaggtttcctcaaggac
gtagcgtcgcgcgtgtgcatcgagcggaagccgctgcggttctgcgccagccgcctggcg
gcgctgctgcgcacgctcgaggtcgccgacccctcgcacttctccgcgctcacgctggtc
acgcacctggcaacactagtctcgacctacactaaaggattcacaattataatagagccg
tttgatgataaaacgccaacagtatcgaaccccatcttgcattttacatgtatggactct
tcaatagcgatgagaccggtattcgcgaggtttcaaacagtaattataacttcaggaacc
ctgtcgcccctggacatgtacccgaagatcttggacttcaacccggtcatcatgagctca
ttcaccatgacgctggcacgaccttgtatattgccaatgatcgtgtcgaaaggtagcgac
caagtggcgatatcgtcgaagtacgagtcgcgcgaggacgtcgccgtcatacggaactat
gggcagctgctagtcgagatagcatcttgtgtgccggatggcgtggtttgcttcttcacg
tcctacttatatttggagagcgtggtcggcgcttggtatgaccagggagtagtggccagt
ttacagcgacacaagttgttgttcattgagacgcaggattcggctgaaaccagtttcgcg
ctcatcaattatatcaaggcgtgcgaaagcggtcgcggcgccgtcttactgtcggtggct
cgcggcaaagtatcggagggcgtggacttcgaccaccacctgggccgcgcggtgctcatg
ttcggcatcccgtacgtgttcacccagagccgcatcctcaaggccaggctggactacctg
cgggaccagttccagatccgcgagaatgatttcctgacgttcgacgctatgcgacacgcg
gcacagtgcgttggcagagctttgcgtggtaaaactgactacggcatcatgatcttcgcg
gacaagcgtttcagtcgggcagacaagcgcacgaagctgccgcggtggatacaggagcac
ctcaaggactctctgtgcaatctcagcacagaggaggctgtgcagatctgcaagcgctgg
ctccgccagatggcgcagccgtttactcgagaagatcaactcggcgtgtctctgctgacg
ctgcaacagctgcagtcgcaagagcagcaggagaagatcgagcggcaggtcatacagaag
tga

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