Amyelois transitella (navel orangeworm): 106129743
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Entry
106129743 CDS
T09957
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03013
Nucleocytoplasmic transport
atra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106129743
03015 mRNA surveillance pathway
106129743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106129743
Enzymes [BR:
atra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106129743
5.6.2.5 RNA 5'-3' helicase
106129743
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106129743
mRNA cycle factors
Common to processing body (P body) and stress granule
106129743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
Helicase_RecD
AAA_16
NPHP3_N
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
AAA
Motif
Other DBs
NCBI-GeneID:
106129743
NCBI-ProteinID:
XP_013183859
LinkDB
All DBs
Position
16:complement(join(6657047..6658786,6659370..6659529,6660098..6660268,6660480..6660689,6661004..6661119,6661444..6661511,6661790..6661860,6662152..6662352,6663101..6663288,6663517..6663696))
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AA seq
1034 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQTSQHDHGLTTSHQ
VNGLGRSELTSKVSSVTNAIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWAGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFNVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARVLGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLLKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPPRDPLAYVGPERAALLHAAVPAAAFAA
HRALRPPPAARARRRAARLSQEPLSQQAAALSLSQGASQPDFSQESGAPDCPSQPDGLLS
QDSSFQGGFRARQY
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcgtacggtccgagttcgcaaacgctcacgtttcttgataccgaggag
gctgatcttatcggagctgatactcaaggctcagagtttgagtttaccgattttacttta
ccttcccaaagtcaaacgcaaacatctcagcatgatcatggtctgactacctcgcatcag
gttaacggcttggggcgctcagaattaacttctaaagtttctagtgtcactaacgcaata
gcagaattgcaatttgaagaagaagatgaagcactatatagcagcaaggaactcccggac
catgcatgcaaatattgtggaattcatgaccctgccacggtcgtcatgtgcaacatatgt
aacaaatggttctgcaatggacgaggtaacacctctggctctcatatcatcaatcatctg
gtgagagccaaacacaaggaagcggcgttgcatcgtgatggacctctgggagagaccctg
cttgaatgctactcatgcggtgcccgaaatgtgtttgtcctgggctttattcctgctaag
gctgactctgttgttgtcttactgtgccgccaaccatgtgctgctcaaagctctttgaag
gatatgaactgggatcaggagcagtggaaacctttgatttctgaccgtgctttcttatcc
tggctggtgaaggtaccctctgaagctgagcaaatgagagctcgtcaggtgacaccgcaa
caaataggtcgtctagaagagctatggcgcgacaacgttgacgcgacgttccaagacctg
gagaaacctggggtggatgaagaacctcagcaggttttgttgagatacgaggatggatac
caatatcagaacatctttggcccacttgtcaagctggaggcagattatgacaagcgttta
aaggagtcccaaactcaagaaggcatcgaagtgcgttgggacgtgggtctgaacaagaag
accatagcatacttcactttggcaaagacggatagtgatatgaagctcatgcatggagat
gaattaagattgagatacgtgggtgagctgcacaaggcgtgggcaggtgtgggccacgtg
atcaaggtgcccgacaactacggcgacgacgtcggcctcgagctcaagagcggcgccggc
gccccgctcgactgcacctccaacttcaacgtcgacttcatatggaagagcaccagcttt
gacagaatgcaactggcgctccgcaagttcgcggtggacgactcgtcggtgtcgggctac
atctaccggcggctgctgggccacgaggtggaggaggtgctgttccgcgtgcacctcccc
aagcacttcagcgcgcctcacttgcctgacctcaatcgctcgcaggtttatgctgtaaaa
cacgcgctccaacgtccactttcgcttatccaagggcctcccggaactggaaaaactgtt
acatcagcgaccatcgtctaccaacttgtgaggcaaaacggaggccccgttctcgtctgc
gcgccttccaataccgccgttgaccaactcactgagaagatacacagaactgggttgaaa
gttgtcagattatgcgccaaatcccgtgaagctatggagtcttcggtttcattcttagcc
ctacatgagcaagctcgcgtactaggctccgctgatagtgaactacggaaattgactaga
ctcaaagaagaagcgggagaattgtctgcagctgatgagagaagatatcgcgctttacgc
cgcgccgctgaaagaagactgttagacgccgcagatgttgtctgtaccacttgcgtgggc
gctggagacccgagagtggctcgaatgagattccaatctatccttattgatgaaggcatg
cagtctaccgaaccggagtgcatggtgcccgttgtactaggagctagacaacttatcctt
gtaggagatcattgccagttgggaccagtcgttatgtgcaagaaggcggctaaagccggc
ctcagccagagtcttttcgagcgtttggtcgtgctcggtatccgtcctttccgacttgaa
gtacaatatcgtatgcatccggaattgtcacgtttcccatccgatttcttctatgagggc
tcccttcaaaatggcgttagtgcagaggagagacgccttctaaaaattgatttcccatgg
ccgcgccctgatcgcccgatgttcttctatgtgactcaaggtcaggaagaaattgctggg
tctggaacatcgtacttgaataggactgaagctgctaatgttgaaaagttgacaacacgc
tttttgaaagccggtgtgcgtcccgagcaaatcggaatcatcacgccttacgagggacaa
cgctcttatctggtacagcatatgcaatatcaaggaagtttgcatgctaaactgtatcaa
gagatcgaagttgccagcgtagacgcgttccagggtagggaaaaggatatcatcatcatg
tcgtgcgttcgctcgaacgagcaccaaggaattggatttttgagcgaccctcgccgattg
aacgtagctctgacgcgtgccaaatacgggctcatagtagtcggcaatccgaaagtgctc
agcaaacagccattgtggaaccatcttctagcgttctacaaggagcgccgcgtgctaact
gagggtcctctgtcgaacctgaaggagtccgcgatacagttcgcgaagcccaagaagctg
gtgaacgctcagaacccggggtcgcacttcatgtcgacgtcgatgttcgacgcccgcgag
gcgatggtgcccggctccgtctacgaccgcgcgcggccgccgcgcgacccgctggcctac
gtgggccccgagcgcgccgcgctgctgcacgccgccgtgccggccgccgccttcgccgcg
caccgcgcgctgcgcccgccgcccgccgcgcgcgcccgccgccgcgccgcgcgcctctcg
caggagccgctgtcgcagcaggcggcggcgctgtcgctgtcgcagggcgcgtcgcagccc
gacttcagccaggagtcgggcgcgccggactgcccgtcgcagccggacgggctgctgtcc
caggactcgtcgttccagggcgggttccgcgcgcgccagtactga
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