KEGG   Amyelois transitella (navel orangeworm): 106129807
Entry
106129807         CDS       T09957                                 
Name
(RefSeq) histone deacetylase 6 isoform X2
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
atra  Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:atra00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:atra01009]
    106129807
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106129807
   04131 Membrane trafficking [BR:atra04131]
    106129807
   03036 Chromosome and associated proteins [BR:atra03036]
    106129807
Enzymes [BR:atra01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     106129807
Protein phosphatases and associated proteins [BR:atra01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     106129807
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     106129807
Membrane trafficking [BR:atra04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    106129807
Chromosome and associated proteins [BR:atra03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     106129807
SSDB
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Other DBs
NCBI-GeneID: 106129807
NCBI-ProteinID: XP_013183933
LinkDB
Position
3:join(11353012..11353014,11353085..11353219,11355009..11355098,11357183..11357313,11358610..11358793,11359812..11360014,11360880..11360948,11361639..11361831,11363270..11363329,11364184..11364377,11365320..11365573,11366615..11366696,11367506..11367652,11368147..11368270,11369932..11370159,11370421..11370546,11370977..11371106,11371581..11372572,11373197..11373418)
AA seq 1188 aa
MSTPPPQSRRSGGDSKKPSPPPSTIVTRNGARKAKIQTRAMSAGAKPSALVLAAKKKALQ
KKKQTVDTFLRDHYQIAMESKHKVKGPTGFVTEPRMAEHRCLWDGNYPECPERLISIIER
CRELNLIEQCQEFAPRAATKEELLTLHDHSVYEMLEKTHNNHDEEYLERISAKYDAVYIH
PSTHELALIAAGSTIDMVDRIVSGQVQNGAAFVRPPGHHAMAAEPCGYCFYNNVALAAKH
ALDKHGLKRILIVDWDVHHGQATQQMFYDDPRVVYFSIHRYEHGSFWPNLRQSNYNYIGA
GAGRGYNFNVPLNKTGMTDRDYLAIWHQLLLPMAFEFSPELVLISAGYDAALGDEKGEME
VTPACYATLLHQLRAACPAVCAALEGGYCLPSLAEGAALTLRTLLGHPPPVLQPAGEPCD
QIIDAILNCIYVHKPYWKCYNYQPTYSIDATVPNVCDGKKQKHTVTLRWEGDETRPETFA
TRNCYPLQDDKTKREIAQRLNHLRIVTELRSPRHAVGYVYDEAMLKHKNICEPDHVECPE
RIMRIHERHRDFGLLSRLHMVDGARASDEQILAVHSKRHLNKLKELATTKLRDLNNQKEA
YDSVYFHPDSLESAAIAAGCVIQMVDAVLTNVVGSGVCVVRPPGHHADDDCPSGFCLLNS
AVAAAAHAVQAHGVDRVLLLDWDVHHGNGSQRITYADNKILYMSIHRYDHGSFFPHSTDA
DHTAVGEGKGEGYNVNVPWNKRGMGDTEYLAAFTQVILPIAYEYNPELVIVSAGFDACVG
DPLGGCKVSPECYGRMTQLLHGLAGGRLVLCLEGGYNVTSISYAMTMCTKALLGDPIGHH
YEQRTAPHWTAIESINNVITTHKKYWKNLKFQLALPIENVLEEPLPSRGLKVDEKSSMPL
ANADSKIESHLDGSLESNMADLAIDKPMDRIDCDGDRNSNVKEKSEDKSVNMSVDKPVCS
DGIHCGTDDEDESPNVKENIDKKSANTSIDKPACSGGHCGIGEKDKRKDNEPSNSKQLDK
VEPSSIKVCSSKDKIGAIDTSGPSSSTEKTTLVDYLAENMQAIVNGEMFAVIPLAWCPHL
ETMYAIPASVKFEQGVKCVECEETVENWVCLHCYVTACGRSINGHMQSHYRTTQHPLVLS
LIDLSVWCNECDAYVDNALLYDAKNNAHLCKFGEEMPWCYKTDTIHMQ
NT seq 3567 nt   +upstreamnt  +downstreamnt
atgtcaaccccgccgcctcagtctcgtcgatctggcggcgatagtaaaaaaccttcccca
ccgccttcgactattgttacaagaaatggagcccggaaggccaagattcaaactcgtgcc
atgtctgctggtgctaagccatctgctttagtgctggcagctaagaaaaaagctttacaa
aagaaaaaacagacagtggatacttttttaagggatcactatcaaattgccatggaatca
aaacacaaagtgaaaggtccaaccggcttcgtgacggagccccgtatggctgaacaccgg
tgcttgtgggacggcaactatcccgagtgtccggagcgactcatcagcatcattgaaaga
tgccgagaactgaatctcatcgagcaatgtcaggagtttgcgccgcgggcggcgaccaaa
gaggaactgttgacgctacacgaccattcagtttacgagatgctggagaagacgcacaat
aaccatgatgaggaataccttgagaggatctcggcgaagtatgatgctgtttatatacac
ccgagcacgcacgagttagcattgatcgcggccggttctaccatagacatggtagaccgc
attgtctctggtcaagttcagaacggcgccgcgtttgtgcggcccccgggacaccacgcc
atggcggccgagccgtgcggctactgcttctataataacgtcgctttggcggcgaaacac
gctttggataaacatggcttgaagaggatactcatagtggactgggacgttcatcacggg
caggcgacgcaacagatgttttatgatgacccgagagtggtatacttctccatacatcgc
tacgaacacggttccttctggccgaacctgcgccaatctaactacaactacatcggcgcc
ggcgcagggcgggggtacaacttcaacgttcccctcaacaagacaggaatgacggaccgg
gactatctcgccatttggcaccagctgctgttacccatggcttttgagttctcgcccgag
ttggttctcatctcggccgggtacgacgcagccttaggcgatgagaagggcgagatggaa
gtgaccccggcatgttacgctaccctcctgcaccagctgagggcggcgtgcccggccgtg
tgcgcggcgctggagggcggctactgcctgccgtcgctggccgagggcgccgccctgacg
ctgcgcaccctgctggggcacccgccgcctgttctgcagcccgccggggagccctgcgac
caaattatagacgcgatcctaaactgcatatacgtacacaagccatattggaaatgttat
aactaccaaccaacgtatagcatagacgcaacagtgccaaacgtgtgcgatggaaagaaa
cagaagcatacggtaacgctgaggtgggagggagacgaaacgaggccggagactttcgct
acgaggaactgttatccgctgcaagatgataaaactaaacgagagattgcgcaacggctc
aatcatttgagaatagtgacggaactgcggtctccgcggcacgcagtcggctacgtgtac
gatgaggccatgttgaagcacaagaacatttgtgaacctgaccacgtggaatgtccggag
cgtataatgaggatacatgagagacaccgcgatttcggactattgtctcgcctgcatatg
gtggacggcgcacgcgcatccgatgaacagatactggctgtgcactcgaagaggcatctg
aacaagctcaaagagttggcgacgaccaaactgcgtgatctgaacaaccagaaagaagca
tatgactctgtctacttccaccctgactcgttggaaagtgcggccattgctgccggctgt
gtcatacagatggtagacgcggtccttaccaacgtggtaggcagcggcgtttgtgtggtg
agacctcccggtcaccacgcggacgacgactgccccagtgggttctgcctgctgaactcg
gccgtcgcggcggccgcgcacgccgtgcaggcccacggggtggacagagtcctgttgctc
gactgggacgtgcatcacggcaacggctcgcagaggatcacgtatgctgataataagata
ctgtacatgtcaatccaccgttacgaccacggctctttcttcccgcactccaccgacgcc
gaccacaccgcggtgggggaggggaaaggggaggggtacaatgtcaacgtgccttggaac
aagcgtggcatgggcgacacggaatacctagctgcgttcacgcaagtgatactgccgatc
gcgtacgaatataaccccgaattggtcatcgtttcagccggattcgacgcttgtgtgggt
gacccgctaggaggttgcaaagtatcgccggaatgctacggccgtatgacccaactccta
cacgggttggcgggcggcagactggtcctatgtctcgaaggtggctacaatgtcactagt
atatcctacgccatgacaatgtgcaccaaagccttactcggtgaccccatcggacaccac
tacgaacaaagaacagccccacattggaccgcgatagaatcaatcaataatgttatcaca
acacacaaaaaatactggaaaaatctcaagttccaactagcgttgcccatagagaatgtt
ctagaagaacctttgccatccagagggttaaaagttgatgagaagtcaagtatgccattg
gcaaatgcagactccaagattgaaagccatttggacggttcgttagagagcaatatggcg
gatttggccatagataaacctatggatagaattgactgtgatggcgatcgaaattcgaat
gtgaaagaaaaatcagaagacaagtctgtaaatatgagcgtagacaaaccagtctgctct
gatggtattcactgcggtacagacgacgaggatgaaagtccaaatgtaaaggagaacata
gacaaaaaatctgcaaatacgagcatagataaaccagcatgctcgggcggtcattgtggg
atcggcgagaaggataaaagaaaagacaatgaaccgtcaaacagcaagcagttagacaaa
gttgaaccgtcaagtattaaagtatgtagttccaaagacaaaattggtgccatagacaca
agtggtccttcttcaagtacagagaagactacattagtcgattatttagctgagaacatg
caagctatagtgaatggtgaaatgtttgctgtgattccgttggcttggtgccctcatttg
gagactatgtatgccattccggcctcggtgaagtttgaacagggagtcaaatgcgtggag
tgtgaagagactgttgagaattgggtgtgtctgcactgttatgttacggcatgcggtcgc
agtataaacgggcacatgcaatcccattacagaacgacgcaacaccctctagttttatcg
ctaattgacctgtcagtttggtgcaacgagtgtgacgcatacgtcgacaacgcactgcta
tacgacgcaaagaacaacgcacatttgtgcaagttcggcgaggagatgccttggtgctac
aaaactgatactattcatatgcaataa

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