Amyelois transitella (navel orangeworm): 106129997
Help
Entry
106129997 CDS
T09957
Name
(RefSeq) N-glycosylase/DNA lyase
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
106129997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atra03400
]
106129997
Enzymes [BR:
atra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
106129997
DNA repair and recombination proteins [BR:
atra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
106129997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
HHH
HHH_2
Motif
Other DBs
NCBI-GeneID:
106129997
NCBI-ProteinID:
XP_060806599
LinkDB
All DBs
Position
22:complement(join(5958917..5959006,5959430..5959624,5959892..5960062,5960534..5960645,5960851..5961195,5962587..5962663))
Genome browser
AA seq
329 aa
AA seq
DB search
MSWNKISCNRRELQLIGTLNGGQSFRWTHDKDKDEWTGIFSKTVWKLRQIEDYLQYKVIG
TLPENSTKSNKNSKQDEKFKKTIESYFRLNLNLLESYKEWSGKDELFKSCCQQFYGIRML
KQEPVENLFSFICSQNNHISRISSMVEKLCTQYGEEICSNEGVTYYAFPTVDKLAQPEVE
SKLRELGFGYRAKFIQKSAAQIVELGGAKWFQTLQDMKYKDARSELMKLHGIGPKVADCI
CLMSLDHLEALPVDTHVYQIAAQNYLPHLRGKKNVTEKMYVEIGDHFRKLYGDMAGWAHT
VLFCADLKKFKQNENDAPDVSQPKKRKKK
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgagctggaataaaatttcatgtaaccggcgagagctgcagttaattggcactctaaat
ggaggtcaaagtttcagatggacacatgataaggataaagatgaatggacaggaatattc
tcaaaaacagtttggaaattacgacaaattgaagattatttacaatacaaagtgattgga
actttgcctgaaaatagcacaaaatctaacaaaaacagtaaacaagacgaaaagttcaaa
aaaactattgaaagttatttccgacttaacttaaatttgttggaatcttataaagagtgg
tcaggaaaagatgaactttttaaatcttgttgtcaacagttttatggtattaggatgttg
aaacaggagcccgtggaaaatttgttctcatttatttgcagtcaaaataaccatatatca
agaatttcaagtatggtggagaagctctgtacacaatatggagaagagatttgcagtaat
gaaggagtcacttactatgcatttcctactgtagacaagcttgctcagccagaggtggaa
tcaaaactacgagagttaggttttggatacagggctaagtttatacagaagtctgctgct
cagattgtggagttgggtggggcgaagtggttccagactctacaggatatgaagtataaa
gatgcaagatctgaactgatgaagttacatggtattggaccaaaggtggccgattgcata
tgcctcatgtcccttgaccacctggaagctttaccagtggacactcacgtgtaccagatc
gcagcacaaaactacctaccacacctcagaggcaagaagaatgtcacagagaagatgtat
gtggaaattggtgaccacttccggaaattgtacggagacatggcaggatgggcccacact
gtattattctgtgcggatcttaaaaaattcaagcagaatgagaatgacgcacctgacgtt
agtcagccgaaaaaaaggaagaaaaagtaa
DBGET
integrated database retrieval system
