KEGG   Amyelois transitella (navel orangeworm): 106130569
Entry
106130569         CDS       T09957                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106130569
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106130569
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106130569
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     106130569
SSDB
Motif
Pfam: Not1 NOT1_connector CNOT1_CAF1_bind ARM_Cnot1 CNOT1_TTP_bind DUF3819 CNOT1_HEAT CNOT1_1st Adenyl_transf
Other DBs
NCBI-GeneID: 106130569
NCBI-ProteinID: XP_013184896
LinkDB
Position
Z:join(3971498..3971599,3976744..3976968,3978085..3978268,3978367..3980866,3981354..3982770,3982882..3983445,3983930..3984178,3984464..3984769,3984924..3985301,3985917..3986063,3986407..3986550,3991177..3991605,3991931..3992115,3992525..3992788,3993618..3993696)
AA seq 2390 aa
MNLDPLTFSLSQINYLVINLNKKNFKQTNQELSQIVSLYGLEAENQLLRCLFTEAAKTSW
DTDRQGPSSNNNSLHASLLSQHLAALLNHPAKATVLCRAVDNPTRAVQKILKPTNTLLNR
LSRLLKLTTAEEVAFSLVLRKNSSKPEIVSLAKQHLKKRFLDLVQCYLDAERGHQAERAG
LQECSPEVLQTLLTNLAHENLATVTKDLFLLRLRVDFPREVVPIVLAPLLYPDDTQTPLE
EMTTADDMTAAMMENSLAEIIRDIGYSFTSSIEECKNNMLNFGAREPTAMDVAKMISMMV
RYHATVPDGPQIQTPGNFWMSHESKKDPTTHGHGETWNAEVFVQTLKELASNLNWKEVIL
QLDHPEFIVPDRQGLSLLFTILRLGLQSAGYPANIFPVDYLCRRWTNLEGQMSLISNIIK
HPDIFCFADHPFHPVSIDLLKSPPESDNKEIATWRCLYLVELLLYAAERGFYMQVHELFK
FPLQNCPDILLIVLLQIPPPVTVFRQELLTMLIPIFLGNHPNSGIILHHAWHTQNPNIKP
VIMHAMAEWYIRGESDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLKL
DKWLTDKIRDHGETFVSAMVKFLQRRCPQLLGKPDEQLPKAAQLPNETVATMLACLQLCI
QNVQPELQEAIYNVIANCQTLLLSKRQSIAGITRPHTRVIETPFNPAGLGGQLFTPHVES
ITSLTTNVANMNLAAPANTTFAMPGTLGPLVTTPGSPSRLMGAGPNSPFTMMPLQHTNVA
NMGTLARMAPAPAMDKPRMPDPLHFPEIMHSVTKEIEDEANGYFQRIYNHPPHPTLSIDE
VLEMLKKFQDSPNKREREVFSCMLRNLFEEYKFFPQYPDKELHITAQLFGGIIEKGLVPT
YVSLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSEFPPH
LIEYIEYGLQNQEPPTKPQGPVLPSSLAAVLNQSAVVTVSAPYRAVVCAHSSISAISKVT
NAAGGMGSRPSIANATNIDTLLTATDREEKISSPPEAIQDKTAFIFNNLSQLNLQTKCEE
LKEIITEEYYPWLSQYLVMKRASIELNFHALYSNFLDVLKIREINKMVTKETYRNIKVLL
RSDKGIANFSDRSLLKNLGHWLGMLTLARNLPILHVDIDLKALVLEAYHKGQQELLYVVP
FVAKVLESCAKSVVFKPPNPWTMALMNVLAELHQEPDLKLNLKFEIEVLCKNLSLDISDL
KPAIYLKDPEKVRLIEFQLSQPKQNKEAASTMPVNQTALVQTPQIQYMPPQPAALPTEEM
AATAPTPTGGLVSNDPNLMGVLGLPEPRFSYLDVNVSSTSAFGQKICFNPHIILFQNYPH
LKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVRMRTCAHHMTRNL
TAGMAMITCREQIISTISTNLKTAFITALLPSTPQQEIVESAAAVLATENMELACAFIQK
TAVEKALPELDKRLMNDYELRKLARQEGRRYFDPVVLTYQTERIPERVRQRVSGPTDMQI
AVYEEFACNIPGFMPVRDAGMFIPKQTTQDQLSQMTFSQVMNPTQVYGADEMTALINAAE
MFLANSVGVATLSVQAANMHSLLECLFLARRNRDIVSGCTLLQKAVEGLLDGHIVQPGAS
SDHVEMMTRYRDIHLRVLKLLEDARVYGHLWTTKQITCCLTECREDLRYNIEAIDCLIRN
HLINLHQYDIALAHMMETGNNYMAVAFAMQLVQLYLVDDRNNMFVNESDLYHTTEMLVRI
MTHSRQPPPEGLGSLIEMLRVNQDPSAYLGERSPLGPTAHIHSGIMSVRARDYDDPPGLQ
EKTENLLREWRNVLLSPLTEIDIAQNFNLYVHRMNMNGILKSDDMITRFFRIATQKCIEN
VYQLLNEDRANPPPTPVKKEKYYTMCDSFIKLVSLLIKNTADSGNPTPKLNLLNKILGII
AGWLLTDHEDQGSNFQQLPYHRLLLVLFLDMNMAEPVLESMNYQVLTAFCHTLRIIRPSN
ASGFCYAWLELVAHRAFINRVLAVTPQQKVIMGWGMYSTLLIDLFKYLDPFLRNTELAAP
VMMLYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLILSAFPRNMRLPDPFT
PNLKVDLLAEISLPPRAVINYATILPSSQFKTDLDAYLKARAPVTFLSELRGNMQVLNDP
SRRYNSQLMNAVVLYVGTQAIAHIRSKGQTPNMSTIAHSAHMDIFQNFTVDFDFEGRYLF
LNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRMLLERLIVNRPHPWGLLITF
IELIKNPIYKFWTHEFVHCAPEIKKLFESVARSCIVEKTGGGGGEREIGE
NT seq 7173 nt   +upstreamnt  +downstreamnt
atgaacctggaccctttaacgtttagcttatcgcaaatcaattatctcgttataaattta
aataagaagaactttaagcagaccaatcaggagctgtctcagattgtcagcctttatgga
ctggaagcagagaaccaactcctgaggtgcctgttcaccgaagcggcgaagacttcgtgg
gacactgaccgacaaggaccatcgtcgaataataatagccttcacgcctcgctcctgtct
caacatttagcagctctgcttaatcatccagcgaaagctacagtactttgccgcgctgtt
gacaaccccacaagggcagtacagaagatattaaaaccgacaaatacattactcaatcga
ctttcaagattattgaaattgaccactgccgaagaagttgccttttcactcgtgttgagg
aagaattcttcaaagcccgaaatcgtatcattagcgaagcaacacctcaagaagcgattc
ttagatctcgtacagtgttacttagacgctgaacgcgggcatcaagcggagcgtgcaggt
cttcaggaatgcagccctgaagttttgcaaactctcctcacgaacctcgcgcacgagaac
ttagctactgtgaccaaagatttgtttttattgcggctgcgagttgacttcccgcgagaa
gtcgtacctatcgtattagccccacttctataccctgacgatacacagaccccgctcgag
gaaatgaccacagctgacgacatgaccgcagccatgatggaaaattcactcgcggagatc
atccgagacatcggatactcgttcacctcatcgatcgaggaatgcaagaacaacatgctc
aacttcggggcgagggaacccacggcgatggatgtcgcaaaaatgatatccatgatggtc
agataccacgccaccgtcccggatggccctcagatacaaacaccaggaaacttttggatg
agtcacgagtccaagaaggatcctaccacacacggccacggcgaaacgtggaacgccgaa
gttttcgtacagacactcaaagaactagcttccaacctcaactggaaagaggtgatctta
caactcgatcacccagagttcatagtacccgacagacaaggactgagtttactcttcaca
atattacgacttggtttgcaaagtgcaggctatccagcaaacatttttccagtagattat
ctgtgccgtcgctggaccaatctagaaggacagatgagtttgatcagcaacatcatcaag
catccagacatcttttgcttcgctgaccaccctttccatccagtgtcgatagatttgctg
aagtcgcctcccgaaagtgacaataaggagatcgccacttggcgttgcttgtacttagta
gaactactcctgtatgcagcagaacgtggattctacatgcaagtgcatgagctctttaaa
tttcctcttcagaactgccctgacatcttactcattgttttattacaaatacctccacct
gtgacagtcttcaggcaagaacttctcacaatgcttataccaattttcttaggtaaccac
cctaattcgggaatcattctccaccacgcgtggcatacacagaatcccaacatcaagcct
gttatcatgcatgctatggcagaatggtacatacgtggcgaaagtgaccagtccaaactc
tcaagaatattagatgtagctcaagatttgaaagcgttatcgttactactgaacgtacag
tcattcccgttcgttatcgacttggcctgtttggcctcacgacgggagtatcttaaatta
gacaagtggctgacagacaagatcagagaccacggagagacttttgtatcggctatggtc
aagtttcttcagagaagatgcccgcagttgttagggaaacctgacgagcagcttccaaaa
gcagcgcaactgcccaacgagactgtcgccactatgttggcatgtcttcagctttgcatc
caaaacgtccaaccagaattgcaagaagccatctacaacgttatcgctaattgccaaacg
ctattgttgagtaagcgacaaagcattgccggtataacgcgtccacacaccagggtcatc
gaaacacccttcaatcctgccggtttaggtggacaattattcactccacatgttgagtca
ataaccagtttgacgacaaatgtggcaaatatgaatttggccgctccggctaatactact
tttgccatgcccggaactctaggtcctttggttacaactcccggatccccttcgcgtctt
atgggtgctgggcctaacagcccttttacaatgatgccattgcaacacacgaacgtagcc
aacatgggcacattggccagaatggccccggcgcccgctatggacaaacctcgcatgcca
gaccctcttcatttcccagagataatgcacagtgtcaccaaagaaatagaagacgaagca
aatggatattttcagcggatttacaaccatcctccgcacccgacactgtctatcgatgag
gtcttagagatgctcaagaagttccaagattcgccaaacaaacgcgagcgcgaagtattc
tcatgtatgctacggaatctctttgaggagtacaagttcttcccacagtatccggataaa
gagttgcatatcacggctcaactgttcggaggcatcattgagaaaggattagtcccgacg
tacgtgtcgctggggctcgccctgcgattcgtgctcgacgctcttcgaaaaccagaagga
tcgaaaatgtattattttggaatcgccgctttagacagattcaagtcgcgtttgaaggac
tatcacaagtattgtgaacacgtgagggcgattccacatttcagcgagttcccaccgcat
ctaatcgagtacatcgagtatggcttgcaaaatcaagagccacccaccaaaccgcaagga
cccgtgctgcctagcagtttggcggccgtgttaaaccagagtgctgttgtcaccgtgtca
gcgccctacagggccgtcgtatgtgcgcattcgtccatatctgcaatatcgaaagttacg
aacgccgctggaggcatgggtagtcggccttctattgcgaatgccaccaacatcgacacc
ctactgactgctacagacagggaagaaaagattagttcccctccagaggccattcaagat
aaaacagctttcatttttaataacctcagtcagttaaacctccaaactaaatgtgaagag
ctcaaggaaataatcacagaagaatactacccatggctatcacaatatcttgtcatgaag
agagcatccatcgaactgaatttccatgctctgtattccaatttccttgatgttcttaaa
atacgcgaaataaacaagatggtcacaaaagaaacgtaccgcaacatcaaggtgttgctg
cggtcagacaaaggcattgcaaatttttctgatcgttctctattgaagaatcttggccat
tggctcggtatgttgactcttgctcgcaacttaccaatcttacatgttgacatcgatctc
aaagccttggtgctcgaagcttatcacaagggacaacaggaactcctttacgtggttccc
ttcgtcgctaaagtattggaatcgtgtgccaagagcgtagtttttaagcctcccaatcca
tggactatggcgctcatgaacgtgctagcagagttgcatcaagaacctgacctaaagctg
aacttgaagtttgaaattgaagtgttgtgcaaaaatctcagcctagacatttctgatctg
aaacctgcgatttacttgaaagatccggagaaagtgcgtttgatcgagtttcagctgtcg
cagccgaaacagaataaggaagcggcaagtacgatgccggtcaatcaaaccgcgttagtg
caaacccctcaaattcagtatatgcctccgcaacctgcggcactgccgacggaagagatg
gccgccacggcacctactccgaccggaggcctcgtctccaatgacccaaacttgatggga
gtgctcgggctacctgagcctcgttttagttacctcgatgttaatgtgtcctcgacatct
gcatttggccagaagatatgcttcaatcctcacattatcttattccaaaactacccgcat
ttgaaacaatttgtaaagcccgccatcgaaagatcaatccaggaatggatccatcctgtt
gtggatagatcaattaaatacgccttgacgacttgcgagcaaataattaggaaggatttc
gctctagatcctgatgaggttagaatgcggacatgcgcacatcacatgactagaaatttg
acagcaggcatggccatgataacctgccgggagcagatcataagtacaataagtacgaac
ctgaagacggctttcattacagctctattgccatcgaccccacaacaggaaatcgttgaa
agcgccgcagcggttctcgcgaccgaaaacatggagctagcgtgcgctttcatacaaaaa
actgctgtcgagaaagcgttacccgaactcgacaagcgacttatgaacgactatgaattg
agaaaactcgcacgacaagagggcagacggtacttcgaccccgttgtgctaacctaccag
acagaaaggattcccgaacgcgtgagacaacgcgtcagcggtcctactgatatgcaaatc
gctgtttacgaagaattcgcctgcaatatcccgggatttatgcccgtacgcgacgctggg
atgttcatccctaaacaaaccacacaagatcaactctcccagatgacgttcagccaagtt
atgaatcctactcaggtgtatggggcagatgaaatgacagctctcataaatgcggcagaa
atgtttctagccaactctgtgggggttgccacactttcggtgcaagctgcaaatatgcat
tcgcttttggaatgtttgttcctagcaaggaggaacagggacattgtttctggatgcaca
cttctacagaaggctgttgaaggactattggatgggcacatcgttcaaccaggagccagc
agcgaccatgttgaaatgatgactcgctaccgagacatccatcttagggttctgaagttg
ctcgaagatgcccgtgtttatggccacttgtggaccacgaaacagattacatgctgtctc
acagaatgcagggaagacctcagatacaacatcgaggctattgattgcctcataaggaac
catctcatcaatctgcaccagtacgacatcgctcttgcacacatgatggaaactgggaac
aactacatggcagtagcgttcgctatgcaactcgtgcagctttacctagttgacgacagg
aataacatgttcgtgaacgagtccgacctgtatcacaccaccgagatgctggtcagaatt
atgacccattcgagacaacccccgccagaaggcctggggtccttgattgagatgttgagg
gttaatcaggaccccagcgcgtacttgggcgaaaggtctcctctcggacccacggctcat
attcactctgggatcatgtcagtgcgggctcgcgactacgacgacccgcccggcctccaa
gagaagacagaaaacctcctacgcgaatggcgcaacgtgctgctatcgccactgacagaa
atcgacatcgcacaaaatttcaatctctacgttcatagaatgaatatgaacggcattctc
aaatccgacgatatgatcacgcgtttcttcagaatagccacgcagaagtgcattgagaac
gtataccagctcttgaacgaggacagagcgaacccacctcccactcctgtgaagaaggag
aagtattacacgatgtgtgattcgttcatcaaactcgtttcgttgctgatcaaaaatacg
gccgatagtggcaacccgaccccgaaactcaacctgttgaataagatcttgggcataatc
gcgggctggctgctcaccgaccacgaagaccaaggcagcaacttccagcagctgccgtac
caccgcctacttctggtgttgttcctcgacatgaacatggcggagccagtcctggaatct
atgaattatcaggttcttacagcgttctgccatactctccgcatcatcagaccaagcaat
gcttccggcttctgttatgcgtggctcgagttggtggctcaccgcgcttttatcaatcga
gtgctggccgtgactccgcagcaaaaggtaatcatgggctggggaatgtattctacgcta
ctaatagacctgttcaaatatcttgatccgttcctacggaatactgaactggccgcacca
gtcatgatgttgtacaagggcaccctgaaggttctacttgtacttcttcacgatttcccc
gagttcctttgcgattaccattacggattttgcgatgagatacctccgaactgcattcaa
atgaggaatctgattctttcggcgttcccacggaatatgaggcttcctgatccgttcacg
ccgaatttgaaggtggacctgctggcggaaatctcgttaccgccgcgcgcagttatcaac
tatgcgactatactgccgtcatcccagtttaagactgatttagacgcttatctgaaggca
agagccccggtcaccttcttatcggagttgagaggcaacatgcaggtgctaaatgatccc
agccgtcgttacaacagccaactaatgaacgctgttgttttgtacgtcggcacgcaagcg
attgctcacatacgatcgaaagggcagacacccaacatgtcgacaatagcgcactcggcg
cacatggacatctttcagaacttcactgtggatttcgacttcgagggccgatacttgttc
ctgaacgcgatcgcgaaccagctccgttaccccaatagccacacgcactatttctcttgc
tgcctcctctacttgttcgccgaggccaactccgaggcggtacaagagcaaatcacgagg
atgctgctagaacggctcatcgttaaccgaccacacccgtggggattgctgatcacgttc
attgaacttataaagaatcctatttacaagttctggacgcacgagttcgtccactgtgcg
ccggagataaagaagttattcgagtctgtggcgcgctcgtgcatcgttgagaagacgggt
gggggagggggagaaagggaaataggagagtag

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