Amyelois transitella (navel orangeworm): 106130613
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Entry
106130613 CDS
T09957
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106130613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atra03021
]
106130613
03036 Chromosome and associated proteins [BR:
atra03036
]
106130613
Transcription machinery [BR:
atra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106130613
Coactivators
SAGA/TFTC/STAGA complex
106130613
Chromosome and associated proteins [BR:
atra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
106130613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Phage_T7_Gp5_9
Motif
Other DBs
NCBI-GeneID:
106130613
NCBI-ProteinID:
XP_013184960
LinkDB
All DBs
Position
Z:join(3088794..3089639,3092496..3092660,3093350..3093508,3093762..3093971,3094554..3094697,3097628..3097983,3098407..3098599,3100584..3100760,3101094..3101255,3101526..3101654)
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AA seq
846 aa
AA seq
DB search
MASAEFLEQALSTDVDENAVNAIVGSLENQLVTSVSSCGLRSKVVNVIQGQIPNISSSVS
SNIGVQKYNTEQIVNSGLIPSSVVSNSSVSYNNVLACASSTFVSQSFSGAVSNSGENIKV
LYSQSPNLAKNNRLSYQSQNLVNGCINLATSQHQTHSVPNSSAVAQSVNKTVTMHPPLVI
KQGTTTGQVGMQSGLVTVPLTVSSSMPGSMSNVMLNKPGGQNVVVTSQNLGSAQQAIIPN
VQILNMRPGAPAVAAQKSVATVSPRVVIGTPQVVGARAAAPGITLQTLQSLQPGQPGHLL
LKTENGQYQLLRVGPAPTASTLTAPQTQTIRLSTVPALPGVATVSTSVATPGQMPGPLPS
GPVAAPVAAPAPATVAPATPPPQPPTVTTQKPSDNTKEKCRNFLANLLDLSSKEPKSVEM
NVRNLIQELIDAQVEPEEFCDRLERLLNASPQPCLIGFLKRSLPLLRQSLVTKELVIEGI
NPPAPHIAFSSVPAPTQPTVVATSNVQMQKPTVKSGSSIAVLQNIPLHTKINVNKVTSKG
MTLNNKANFSRAAVTSTGLSTILTPGKSLLKDKEKKSTMQFASQPFADDKMAGDDDINDV
AAMGGVNLAEESQRILGSTELIGTQIRSCKDEYLVPMSVMQSRLKAAAARLGLEEPSPEV
AGLISHAVHERLKNLVEKLAVIAQHRIDVIKQTDSRYEITQDVKGQLKFLEELDRVEKKR
REDSEREMLLRAAKSRSKNEDPEQAKLKAKAKEMQRAELEELRQREANLTALQAIGPRKK
PRLDLPGGSGDTVSNGTGQTNTGFTGRSHLALRTRLKRINQRDMVFLLEQERETAHSMML
FRSYLK
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagctgaatttttagagcaagctttgtctacagacgttgacgagaatgcagtg
aacgctatcgtaggatcgcttgaaaatcaattagtcacctcagtttcgtcgtgcgggttg
cggagtaaagtagtgaatgtgattcagggccagattcctaatatatcgtctagtgtgagt
tctaatattggtgtacaaaaatataacacggagcaaatcgttaacagtggactaattcct
tcttctgtggtctcgaacagcagtgtatcttacaataatgtattagcgtgtgcttcgtca
acctttgtatctcaaagtttctctggcgccgtttctaattctggtgaaaatataaaagtg
ttatacagtcagtcacctaacttggctaagaacaatcgtttgtcgtaccaatctcagaac
ttggtgaacggctgtattaacttagccacatcgcaacatcagactcattctgttcctaac
agttcagcagttgcacagtctgtgaataaaactgttacaatgcatcctcccctagtgata
aaacagggtacaacaactggtcaagtgggcatgcagtcaggattggtgactgtgcctttg
actgtgagttcaagtatgcctggctccatgtccaatgtcatgcttaataagcctggaggg
cagaatgtagttgtgacctcacagaatttgggttcagcccagcaggccataattcctaat
gttcagatcttgaacatgaggccaggtgcacctgcagttgcagctcagaagtccgtagca
acagtttctccgagagttgtaattggcactccacaagttgttggtgctagagctgcagca
cctgggataacgctgcaaactctacaaagtcttcaaccggggcagccgggtcatttgttg
ttaaagactgagaatggtcaataccagctgctgcgggtagggccggcgcccacggccagc
accctaacggctccgcagactcagaccatccgtctatccaccgtgccggcactgccgggt
gtagcgacggtgtcaacgagtgtggccacgccggggcagatgccggggcccctgccttca
ggcccggtggccgccccggtggccgccccggcgccagccaccgtggcaccggccactcca
ccgcctcaaccgccaacggttaccacacaaaaaccgtctgacaacaccaaagagaaatgc
cgcaacttcctagccaatctcctagacctgtcaagcaaggaaccgaagtcggtggagatg
aacgtgaggaatctcatccaggaactgattgacgcccaagtagaaccagaggagttctgt
gatcggcttgaacgactcctgaatgctagccctcagccatgtcttatagggtttctaaaa
cgaagtctgccattgctgcgtcagtcattggtaaccaaggaactggtgatcgagggtatc
aaccctcccgcaccacacatagctttttccagcgtaccagccccaacacaaccgacagtt
gttgcaacttctaatgtgcaaatgcaaaagccgaccgtcaagtcgggcagctctatagcc
gtcctgcaaaacataccgctccacacgaagatcaacgtgaacaaagtcacgagtaaaggg
atgaccctgaacaacaaagctaatttctcccgtgcggcagtcacttcaactggcctctcg
accatcctcacaccgggcaaatccttattgaaggacaaagagaagaagtcgacgatgcag
ttcgcgtcgcaaccgttcgcggacgacaaaatggccggcgacgacgacataaacgacgtg
gccgctatgggaggagtcaatttggctgaggagtcacaaaggattttgggctccactgag
ctaattggcacacagatacggtcatgcaaagacgagtatcttgtgccaatgtcagtgatg
cagtctcgtttgaaggcggcagcggctcggctcggcttagaagagccttctccggaggtg
gctggtcttatcagccacgcggtccacgagaggttgaagaatctcgtggagaaactggct
gtcattgcacaacacaggattgacgttataaagcagactgactcacgttatgagatcaca
caagacgtgaaaggccagttgaagttccttgaagaattggaccgagtggagaagaagagg
agggaggactctgagcgcgaaatgttgctcagagctgctaagtctcgctccaagaacgag
gatcctgagcaggccaagctgaaggctaaggcaaaggagatgcaacgcgcagagctggag
gaactaaggcagcgtgaggcgaacttgacggctttacaggccattgggcccaggaagaag
cccagactggatttacctgggggctctggagacactgtgtccaatggcactggacaaacc
aacactggatttactggccgcagccacttggcgctccgcactagactaaagcggatcaat
caacgggatatggtcttcttactcgaacaagaaagggaaactgcacactccatgatgctc
ttccgtagttatctaaagtga
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