Amyelois transitella (navel orangeworm): 106130945
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Entry
106130945 CDS
T09957
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106130945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atra03041
]
106130945
Spliceosome [BR:
atra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106130945
Complex C
U4/U6.U5 tri-SnRNP related factors
106130945
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PBP_like_2
Peptidase_M26_C
Motif
Other DBs
NCBI-GeneID:
106130945
NCBI-ProteinID:
XP_013185350
LinkDB
All DBs
Position
4:complement(join(1589180..1589354,1590819..1590989,1591620..1591833,1592231..1592366,1592719..1592843,1592971..1593099,1593171..1593186))
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AA seq
321 aa
AA seq
DB search
MTDAEDFNQQKPGKTSKQHNVLPIWGNEQTMNLNPLILANIQGSSYFKVHLFKLKTYHEV
VDEIYYQVKHLEPWERGSRKTAGQTGMCGGVRGVGAGGIVSTAFCLLYKLYTLRLTRKQV
NGLLQHTDSPYIRALGFMYIRYTQPPADLFDWYADYLDDEEEVDPRAGGGGPTTIGALVR
QMLIKLDWFSTLFPRIPVPIQKQIEQKLAEHSRQTAASKPAPANYQAGRGGAGQNYNPGR
TDPDRREHDDRDRRDYGDGDRGDRYPKDKKRDERDRDARERVRDRDRDRDRDRRNRDRHR
HRDRSRSKDRRRSRSRDRRYR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgcagaagatttcaatcaacagaagcctggaaagacaagtaaacagcacaat
gtattaccgatttggggtaatgaacaaactatgaatctgaaccctttaatattagccaat
attcaaggttcgagctacttcaaagttcatctgttcaagttgaagacgtaccatgaagtg
gttgatgagatctactatcaggtgaaacatttggagccctgggagcgaggaagccgcaag
acagcagggcagacgggcatgtgtggcggcgtgcggggtgtgggtgctggtggcattgtt
tccacagcattctgcttgttatacaagctgtacactttgcgactcacccgaaagcaagtc
aacggtttgctacagcacacagactccccgtacatacgggcactgggcttcatgtacata
cgctacacacaaccgccggcagacctgttcgactggtacgcagactacctcgatgatgaa
gaggaggtggacccccgagccgggggcgggggccccacaaccatcggagccctggtgcgg
cagatgctgatcaaactagattggttcagcacgctgtttccgaggatcccagtgccgata
caaaagcagattgagcagaagttagcggagcacagcagacagacagcagcctccaagcca
gctccggccaactaccaggcgggccgagggggtgccgggcagaactacaacccgggcagg
acggatccagacaggagagaacacgatgaccgcgacaggagggactatggcgatggagat
aggggtgacagatacccaaaagacaagaagcgagacgagcgggacagagacgcgagggag
cgagtgcgcgacagagaccgcgatagagaccgcgaccgacgcaaccgtgaccgccaccgg
caccgcgaccgctcccgctcgaaggaccgccgccgctcacgctccagagaccgccgctac
agatga
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