Amyelois transitella (navel orangeworm): 106131115
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Entry
106131115 CDS
T09957
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106131115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106131115
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106131115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
106131115
NCBI-ProteinID:
XP_013185558
LinkDB
All DBs
Position
6:complement(join(6524380..6524611,6524928..6525057,6525138..6525432,6525675..6525849,6525940..6525956))
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AA seq
282 aa
AA seq
DB search
MSEIYKLIHPVKYFNDYLSRNIRPDGRKFSEQRNIKLNVNSLKTADASAVVKCGNTTIVC
GIKLELATPKAEQPDQGFIVTNVELPPLCSSKYKPGPPSDYAQVTSYLVSDIMVNSKCVD
LKDLCITSDKLAWVLYCDMVCLDNDGSLVDACIIALMASLKTVTLPSVTYNDETEDIKID
TNVRKPLKVHGLPVASSFAVYKLLQDEVLLVDPSSYEEEMCGGIGSNFIVCCNNGLLCGT
QKFGGSDLSTECQEKALKIAKDRASLVEEVIDTCLKHELEIK
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaatctataaacttattcatccagttaaatatttcaatgattacctgtctcgg
aatatacgtcctgatggaagaaagtttagtgaacagcgaaacatcaaattaaatgtaaat
tctctgaaaactgcagacgcttcagctgtagtcaaatgtggaaataccacaattgtatgt
gggattaagctggaattagctacacccaaagctgaacaacctgatcaaggttttatagta
accaatgtggagcttccaccattgtgttcatcaaaatataaacctggccctccttcagac
tatgctcaagtaacaagttacttggtgtcagacattatggtaaattcaaaatgtgtagat
ttaaaagatctatgtataacatccgacaagctggcttgggtattgtattgtgatatggtg
tgcttagataatgatgggagcctagtagatgcttgtatcattgcactgatggcaagcttg
aaaacagttacactaccttctgttacctataatgatgaaactgaagatataaaaatagat
actaatgtcagaaaacctctaaaggtacatggattgcctgtggctagcagctttgctgtt
tataaacttttacaagatgaagttttactagtagacccatcttcatatgaggaagaaatg
tgtggaggtattggatcaaactttattgtatgctgtaacaatggattactttgtgggaca
caaaaatttggtggaagtgatctctccactgaatgccaggaaaaagctcttaagatagca
aaggatagagctagtttagttgaagaagtgattgatacttgtttgaaacatgaacttgaa
attaaataa
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