KEGG   Amyelois transitella (navel orangeworm): 106131223
Entry
106131223         CDS       T09957                                 
Name
(RefSeq) paired amphipathic helix protein Sin3a
  KO
K11644  paired amphipathic helix protein Sin3a
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:atra00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04350 TGF-beta signaling pathway
    106131223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:atra03036]
    106131223
Chromosome and associated proteins [BR:atra03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    Sin3A-HDAC complex
     106131223
    REST complex
     106131223
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    106131223
SSDB
Motif
Pfam: PAH Sin3_corepress Sin3a_C HHD_RTEL1 PAH_ZNF598
Other DBs
NCBI-GeneID: 106131223
NCBI-ProteinID: XP_060808790
LinkDB
Position
29:complement(join(944117..944987,945463..945646,946206..946404,947988..948092,949228..949404,950581..950697,951008..951105,953227..953367,954500..954660,955640..955817,956519..956621,956941..957024,958168..958308,958651..958779,959258..959349,960079..960194,961597..961703,962327..962450,967169..967359,968822..968970,969882..969942,975272..975346))
AA seq 1200 aa
MMKRTGVPRLGPEDPAPMPSQVPAQIQQPGASNMHTLAQPAQPILGAATMLSVGGGPAGV
GGFARAPPRPAPAMAYMKPGAPYAAPKQQAPPRLKSPPQLFEAGGGRVSPSLAPPAAQFQ
RLKVEDALSYLDQVKFKFNNQPQVYNDFLDIMKEFKSQTIDTPGVITRVSNLFKGHPELI
VGFNTFLPPGYKIEVQSNGQVSVSMPSPTGLGASGVLLGVHHAAQPQLVHLLPVAQQVNS
AIVHNLSVSAAPANTLHHISQAHQQIEAAIHHAPGGAGAASSHPPAPPGQPVEFNHAIEY
VNKIKSRFSRQPDKYKRFLEILHAYQRGHRDLKEPQMKQQTEQEVYSQVAKLFENQDDLL
AEFGQFLPDAKAVTKPAPAPPAFPRDRSPPLIQPQRIEPEVERFSVSPPHAVHPAIPHAQ
PAQPLPKHTPVSNNSSTPPAVHHHLKRSPSFTSSSQLPAGAPPAKKPRAALAALSGRTVR
DVSYAEASKLATLHDFNFFDRVRKALRSQHIYENFLRCLLLFTNEIISASELLVVTSQYL
CRHPELQKWLQEMLGLSSPPHTPTNTTAGVGYSGVFAEKAPLLQYGRGALDKRYSPVGAL
GAQLRHERAQGDHAMDIDLSTCKRLGTSYCALPRDAANRKCSGRTALCKEVLNDTWVSFP
TWSEDSTFVTSRKTQYEEYIYRCEDERFELDVVIETNASTIRVLEGVHKKLSRMSPEEAA
RFRLDDCLGGHSPTIHQRALRRIYGDKVAVDIIAGLKKNPAVAVPVVLRRLKAKEEEWRE
AQKGFNKQWRELNEKYYLKSLDHQGINFKQNDLKAMRSKTLYNEVEAAYAARKPGPHLVV
NYNIQNKQEGIQIMRDAAELLLHHARRQTAIQKTEKRRIKTLLRRFLPDLFSLPRIPPSD
DEEDRSDYSMCELSPASSGDRESWSPNGGESEMRFLCSSSWYLFLRLHALLVQRLAQVAR
AAAGSAAAHHAASCACALRLKPPAPAAEPARPYAALLELVRGVLDGNTEPAAYEDAAREM
LGIKAYPAYTLDKLVGGCVRQLQHCAAEPWSLRCAELCARGGMRGAHHLLRRARDLLRPE
HAAFLVRVRHSPAQLSAAFTLLESGAGSSAPQHPSHPPVFLRRCAVGADPPPRSHVSANV
RAHAQARKGVPSASGERERSMALRLFRRRETKNRQRAEAVGRERVRRWREWLRRRGEAES
NT seq 3603 nt   +upstreamnt  +downstreamnt
atgatgaaacgcacaggggtccctcgtctcgggcctgaagatccagcgcccatgccgtct
caggttccagcccagatccagcagcctggagcaagcaacatgcatactttagcccaaccg
gcccaacctattctcggagcagcgacgatgctgtctgtgggcggcgggccggcgggcgtg
ggcgggttcgcgcgcgccccgccgcggcccgcgcccgccatggcctacatgaagcccggg
gcgccgtacgccgcgcccaagcagcaggcgccgccgaggttgaagtctcccccgcaactg
ttcgaggcgggcggcgggcgcgtgtcgccgagcctggcgccgccggccgcgcagttccag
cggctcaaggtcgaggacgcgctgtcctacctcgaccaggtcaagttcaagttcaacaac
cagccgcaggtgtacaacgacttcctcgacatcatgaaggagttcaagagtcagaccatc
gacacgcccggcgtgatcacccgggtgtcgaacctgttcaagggccacccggagctgata
gtcggtttcaacactttcctaccgccgggttataaaatcgaagtgcagagcaatggacag
gtgtcagtctccatgccgtctccgaccgggctgggcgcgagtggagtgttgctcggagtt
catcacgcagctcagcctcaacttgtgcatctgttacccgtagcacaacaggttaacagc
gctattgtccacaatttatcagtaagcgcggcgccggccaacactttgcatcatatatct
caagctcatcaacagattgaggcggctatacaccatgcgccaggcggcgcgggcgcagcc
tcgtctcaccccccggcgccgcccgggcagcccgtggagttcaaccacgccatcgaatat
gtcaacaagatcaagtcccgtttctcccggcaaccggacaagtacaagcgattcctggag
atattgcacgcttaccagcgtggtcacagggatttgaaggagccacagatgaaacaacag
acggaacaggaggtttattcgcaggtggccaagctgtttgagaatcaagacgatctacta
gcggagttcggccagttcctgcccgacgctaaagcggtgacgaagcctgcgcccgcgccg
cccgccttcccgcgcgaccgctcgccgccgctcatacagccgcagcgcatagagccggaa
gtggagaggttctcggtgtcaccgccgcacgctgtccatcccgccatcccccacgctcag
cccgcgcagccgctgcctaaacatacgccggtgtcgaacaattcgtcgacgcctccggcc
gtccatcatcatcttaaacgatcaccgagtttcacatcttcgagtcaattaccagcagga
gcgccgcccgccaagaagccgcgcgcggcgctggcggctctgtcgggccgcacggtgcgc
gacgtgtcgtacgcggaggcctcgaagctggccacgttgcacgacttcaacttcttcgac
agagtcaggaaggcgttgaggagccagcacatttatgagaactttctgagatgccttcta
ctgttcactaacgagataatctcagcgtcggagctactcgtcgtgacctctcagtacctg
tgtagacatccggaactacagaaatggctgcaagagatgttggggctgtcttcgccgcct
cacactcccaccaatacaacagctggagtcggctacagcggcgtgttcgcggagaaggcg
ccgctgctgcagtacgggcgcggcgcgctggacaagcgctactcgcccgtgggggccctg
ggcgcgcagctgcgccacgagcgagcccagggcgaccacgccatggacattgatttatcg
acgtgcaagcggctgggcacgtcatactgcgcgctgccacgcgacgcggccaacaggaaa
tgctcggggcggaccgctttgtgtaaagaggtgttaaacgacacatgggtgtctttcccg
acgtggagcgaggattctacgtttgtgacgtcacgcaagactcagtacgaggagtacata
taccgctgtgaggacgagcggtttgagctcgacgttgtaattgaaacgaacgcgtccacc
atcagagtcctggagggggttcacaagaaattgtcccggatgagtcccgaggaggctgcc
cgcttccggttggacgactgtctcgggggacactcgcccaccatccaccagagggcgctg
cggcgcatctacggcgataaggtggcggtggatataatagctggtctgaagaagaatccc
gctgtggccgtcccggtagttctgagaaggctgaaggccaaggaagaggaatggcgggag
gcgcagaagggcttcaacaaacaatggcgtgaactgaacgagaagtattacctgaaatcc
ctggaccatcagggcatcaacttcaagcagaacgacctcaaggccatgaggtccaagacc
ttgtacaacgaggtggaagcggcgtacgcggcgaggaagcccggaccacatttggtggtg
aattataacatacagaacaagcaggaaggtatacaaataatgcgcgacgccgccgaactt
ctcctccaccacgcgcggcggcagaccgccatacagaagacggagaagaggcggatcaag
acgttgttgaggcggttcctgcccgacctgttctcgctgcccaggataccgccttccgac
gacgaggaggatcggtcggactatagcatgtgcgagttatccccggcgagctcgggcgac
cgcgagagctggtcgcccaacggcggcgagtcggagatgcgcttcctgtgctcgtcctcg
tggtacctgttcctgcggctgcacgcgctgctggtgcagcgcctggcgcaggtggcgcgc
gccgcggcgggcagcgcggccgcgcaccacgccgccagctgcgcctgcgcactgcgcctc
aagccgcccgcgcccgccgccgagcccgcgcgcccctacgccgcgctgctggagctggtg
cgcggcgtgctcgacggcaacaccgagcccgccgcctacgaggacgcggccagggagatg
ctcggcatcaaggcgtaccccgcctacacgctcgacaagctggtgggcggctgcgtgcgc
cagctgcagcactgcgccgcggagccgtggtcgctgcgctgcgcggagctgtgcgcgcgc
ggcggcatgcgcggcgcgcaccacctgctgcggcgcgcgcgcgacctgctgcggccggag
cacgcggcgttcctggtgcgcgtgcgccactcgcccgcgcagctcagcgccgccttcacc
ctgctggagagcggcgccggcagctccgcgccccagcacccgtcgcacccgccggtgttc
ctgcggcgctgcgcagtcggcgccgacccgccgccgcggtcgcacgtctctgctaacgtc
cgagcgcacgcgcaggctcgcaagggcgtccccagcgcgagcggcgagcgggaacgatcg
atggcgttgcgcctgttccgcagaagagaaaccaaaaatcgacagagagccgaagcggtt
ggccgggagagagtcaggcggtggcgggagtggctccggcggagaggtgaagcggaaagc
tga

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