KEGG   Amyelois transitella (navel orangeworm): 106131323
Entry
106131323         CDS       T09957                                 
Name
(RefSeq) THO complex subunit 2 isoform X2
  KO
K12879  THO complex subunit 2
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03013  Nucleocytoplasmic transport
atra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106131323
  09122 Translation
   03013 Nucleocytoplasmic transport
    106131323
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106131323
   03041 Spliceosome [BR:atra03041]
    106131323
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106131323
Spliceosome [BR:atra03041]
 Complex C
  Other components
   EJC/TREX
    106131323
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106131323
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 106131323
NCBI-ProteinID: XP_013185845
LinkDB
Position
6:join(6306591..6306658,6307785..6307950,6308077..6308318,6308417..6308550,6308640..6308896,6308980..6309129,6309600..6309769,6309867..6310032,6310114..6310283,6310384..6310582,6310759..6311006,6311109..6311226,6311434..6311566,6312046..6312206,6312836..6313092,6313263..6313422,6313944..6314192,6314593..6314813,6315143..6315311,6315553..6315666,6316335..6316422,6316705..6316789,6316909..6316978,6317233..6317302,6317850..6317890,6322273..6322371,6322492..6322549,6322874..6322944,6323193..6323242,6323942..6323975)
AA seq 1405 aa
MASFARFVSDYCKSWDKSGKEQFIKNVTQSIKDEEKSPLFTKSGKLSGVSQSVYDLLLCG
LRGNLKKDVVLSTLREISSLHADIPSIILDVLCVLDAETCTDIQSDERSNFCHIVRELES
FMSDKLLKERLEIDTLQDVGTLKNKNFYTKFIKIKTKLYYKQRKFNLFREESEGYAKLIV
ELNQEISEDIESKTLLEIIQSLIGCFNLDPNRVLDIILESFEARPHLDKLFITLIKNYMG
DPQVISEVLGFKLGNMEVLDTCKEPPPLMTVIALLLQHQVISLDDIFPWLRPDNFLMAKE
ADKEFKAAQDYIRKLNIVSTKGPQANGPTEFVEEKADPQEYWNNQKLVLSEALLKVTAWK
EFAALSARLPVTTMFARPAIALCNMLHALIEPLYRTHCRVAPKIIGKPIPPLESSLAPPA
CKTFDDMKETVIPALILLGPALHHDPVLMYKIIRILRTARSKPNDPLHYEALTVLDAAIL
PSLTLMEGNCCMAEEIYTLLKLYPYQCRYCLYSRWKNEAGEKIPALMRVRGNALQRIKHI
MKRVSKENIKPQGRLIGKLSHAAPAFLFDYMLLQIQTYDNLIGPVVESLKYLTSLSLDVL
GYCLVEALQRRGRSAGAAHPPWLQALAAFAGAAFKKHNIELTALLQFVANRLKAQHSHDL
LILKEIVQKMAGIEAAEEMTPEQLDAMAGGELLKGEAGYFSQVRNTRRSSARLKEAIVGN
NLDISLCILSAQQRHCCVWKDEEEVPVIGEPPGSQLKVVGRLADQCQEALVQLGTFLASS
HAPDEYAARLPPLQELLREYHVDADVAFFLHRPVLAQKIAARVEVLRKSSDPKSDSLEKS
IERYTTASKETLEPILVSVTPMLPARVWEDISPEFYVTFWSLSMYDLRVPVESYEREIDR
LKIAAANAGKDMSQGTKGKKEQERFNTLIEKLQEERRRQEEHVARVSARLQRECAGWFPA
RAAKSAKNETVTRLMQLCLFPRCVFTPVDALYCAEFVHTVHSLKTPNFSTLLCYDRLFCD
ITYSVMSCTEGEAARYGTFLRRVLRTAMRWHADRAAFQRECAHYPGFVTKYRVSNQFTEA
NDHVGYENYRHVCHKWHYKITKAMVVCLDSRDYVQIRNALIVLIRVLPHFPVLEKLGQII
ERKVDKVKEEEKTQRQDLYVLATGYSGQLRNKVPNMMRESDFHQVGDKHKAAGAAREEPA
KREDAARSPPTPPDNDKRDSRNSDRRRDESDREKESKRDSKTSLKERAKEEIRNKEKSPR
ERSHREERYLEAVSPPHDHRHPPDDIERDVKRRKVEAAGNGKASKEIEERSPEKEKRKAK
VRGDERKERKMSRKRDRAEESLLLEQKRRRDEQKAIIKMNSHQNGSQDDHHYEKYHKREK
SPFRDRSHEEPRDKHRRSNESKMRR
NT seq 4218 nt   +upstreamnt  +downstreamnt
atggcatcttttgcaagatttgtttctgattattgtaaatcttgggacaaatcaggaaaa
gaacaattcataaaaaatgtgactcaatctataaaagatgaagagaaaagtcctttattt
acaaaatctggaaaactttctggtgtatcgcaaagtgtttatgacttactcctttgtggg
ttgaggggcaatttaaagaaagatgtagttctctctacccttagagaaatttcttcttta
catgctgacataccatccataatccttgatgtcttatgtgtacttgatgcggagacctgc
acagatatccaaagtgatgaacgttcaaatttctgccatattgttagggaactagaatca
tttatgtctgacaagcttttgaaggaaagattagaaattgacacattacaagatgtagga
actctgaagaataaaaatttttataccaaatttataaaaatcaagactaagctatactac
aaacagcgtaagtttaatctatttcgggaagagagtgaaggatatgcaaaattaatagtg
gagttaaatcaagaaataagtgaagatatagaatcaaaaactttattagaaattatacaa
tccttgattgggtgctttaatttagatccaaatagagtattagatattatcctggagtcc
tttgaagccagaccgcatctagataaacttttcatcactctcataaaaaattacatggga
gatccacaagttatttccgaagttttaggctttaagttgggaaacatggaagtcttggat
acatgtaaggaacctccaccattgatgactgtgatagctttgcttttacaacatcaagtc
atatctttagatgacatatttccttggttacgtccagataattttttgatggccaaagaa
gcagataaggaatttaaagctgctcaagactatattcggaaattaaatattgtgtcaacc
aaaggtccacaagccaatgggcccacagaatttgttgaagaaaaagctgatcctcaggag
tattggaacaatcaaaaactagttctgagtgaagctttactcaaagtgacagcatggaag
gaatttgcagccctgtctgcacgtttacctgtcaccacaatgtttgcaagacctgctata
gcattgtgcaatatgttgcatgctctcattgagccattatacagaacacattgccgagta
gccccaaagataataggcaaaccaataccgccattggagtctagtttagccccacctgca
tgcaaaacctttgatgatatgaaagagaccgttattcccgccctcattctgttaggtcca
gctcttcatcatgatcctgttttaatgtataagattattcgtattttacgaacagcccgc
tcaaaaccaaatgacccattgcattacgaagcgctcacagtgcttgatgctgccattttg
ccatcccttactttgatggaaggtaactgctgcatggctgaagaaatttacactttgttg
aagttatatccatatcagtgtagatactgtttatattcccgatggaagaatgaagctggt
gaaaaaatacccgcattgatgcgcgtgcgtggaaatgctctacaaagaatcaagcacatc
atgaaacgtgtttccaaagagaatataaagccacaaggccgtctcatcggcaaactgtct
catgctgcaccagccttcttatttgactatatgctgcttcaaatccaaacatacgacaac
ctgatcgggcccgtggtggagtccctgaagtacctgacgtcgctgtcgctggacgtgctg
ggctactgcctggtggaggcgctgcagcggcgcgggcgctccgcgggcgccgcgcacccg
ccgtggctgcaggcgctggccgccttcgctggagccgctttcaagaagcacaacattgaa
ctcactgcgctattgcagttcgtagcgaacagactgaaagcccaacacagtcatgactta
ctgattttaaaagaaattgtccaaaaaatggctggcattgaagctgctgaagaaatgaca
ccagaacaattagatgctatggccggtggagaactattgaaaggagaggctggctacttc
tctcaagtaagaaatacgaggagatcatcagcccgattaaaggaagccatagttggaaat
aatttggacatttcattgtgtatattatctgcacaacaacgtcattgctgtgtttggaaa
gatgaagaagaagtacccgtgattggcgaaccgccagggtcgcaactgaaggtagttggc
aggctggccgaccaatgccaggaggcgttagtccaactgggcacattcctggcgtcctct
catgctcccgacgagtatgccgctcgattacctccattgcaggaacttctccgagagtat
cacgtggacgctgacgtagcgttctttttgcaccgacccgtgttggctcaaaaaatagcg
gctcgagttgaagtcttaagaaagagttctgatcccaaatcggattctttagagaaaagt
atcgagcgttacacaaccgcgtcgaaggaaacattggagccgatactggtatctgtcacg
ccgatgttgcctgcacgagtttgggaggatatctcaccggaattttatgttacattttgg
tcattatcaatgtacgaccttcgagtaccagtggaaagctatgagcgtgagatcgaccgt
ttgaagatagctgctgccaacgccgggaaagatatgtcgcaggggacaaaagggaagaaa
gaacaagagagatttaacactctcattgaaaagttacaagaagagcgtcgtcgacaagaa
gagcacgtggcgcgtgtttcggcacgtttacagcgcgaatgtgccggctggtttccggcg
cgtgccgctaagtctgccaagaacgagaccgtgacccgcctcatgcagctctgtttgttc
ccgcggtgcgtcttcacgcctgtcgacgcgctctactgtgcagagttcgtgcacaccgtg
cactcgctcaagacgcctaacttttccacactcctgtgttatgaccggctgttctgcgac
atcacgtactcggtgatgtcgtgcacggagggcgaggcggcgcgctacggcacgttcctg
cgccgcgtgctgcgcaccgccatgcgctggcacgccgaccgcgccgccttccagcgcgag
tgcgcgcactaccccggcttcgtcaccaagtaccgcgtctccaaccagttcaccgaggcc
aacgaccacgtcggctacgagaactacagacatgtttgccataagtggcactacaagatc
accaaagcgatggtggtgtgcctggactcgcgggactacgttcagatccgcaacgctttg
attgtactcatacgtgtgctcccacacttcccggtgctcgagaaactggggcaaatcatt
gaaaggaaagttgataaggtaaaagaagaagagaagacacagcgtcaggatttgtacgtc
ctagcgactggctacagcggtcagctgcgcaacaaggttcctaacatgatgagggagagt
gacttccatcaggtgggcgacaagcacaaggcggcgggcgcggcgcgcgaggagcccgcc
aagcgcgaggacgcggcgcgcagcccgcccacgccgcccgataacgacaaacgagactca
cggaacagcgacagacgtcgtgatgagtcggatcgagaaaaagagtccaaaagagattcg
aaaacatcgctcaaagaaagagcaaaggaggaaatcaggaacaaagagaaatctccaaga
gaacgatcgcacagggaggagcgttatttggaagcggtatccccaccacatgaccatcgt
catccccccgatgacattgaacgagacgtgaagcggcgtaaagtagaagccgccggcaat
ggcaaggcaagcaaagaaatagaggaacgttcgcctgagaaagagaagcggaaagctaaa
gttagaggtgacgaacgtaaagagcgtaagatgagccgcaaaagggacagggctgaagaa
tctttattgctggaacaaaaacgacgacgcgatgaacagaaagccattataaaaatgaac
agccatcaaaacggatcacaagacgatcatcattacgagaaatatcataaaagagaaaaa
tcgcccttccgtgatcgatcgcacgaggaaccacgagacaaacataggcggtcgaatgaa
tcaaaaatgagaagatga

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