KEGG   Amyelois transitella (navel orangeworm): 106131422
Entry
106131422         CDS       T09957                                 
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    106131422
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106131422
   03036 Chromosome and associated proteins [BR:atra03036]
    106131422
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     106131422
Chromosome and associated proteins [BR:atra03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    106131422
   PBAF complex
    106131422
   GBAF(ncBAF) complex
    106131422
SSDB
Motif
Pfam: SWIRM-assoc_2 SWIRM SWIRM-assoc_1 SWIRM-assoc_3 Myb_DNA-binding Myb_DNA-bind_6 SCHIP-1_C
Other DBs
NCBI-GeneID: 106131422
NCBI-ProteinID: XP_060805961
LinkDB
Position
20:complement(join(4614774..4614891,4615224..4615326,4615665..4615874,4615971..4616114,4616475..4616589,4616799..4616953,4617203..4617395,4617815..4617936,4618327..4618435,4618664..4618805,4619281..4619462,4619611..4619720,4620363..4620469,4620640..4620767,4621307..4621450,4621749..4621903,4622041..4622206,4623700..4623813,4624548..4624667,4624937..4625053))
AA seq 917 aa
MTAICPKKDGGPNVDFFQSPESLAQFDQIRVWLQKNCKKHVQTDPPTKEGLAQLVVQLIQ
YQENKLGKNASDPPFIRLPMKVFMDMKPGGSLCTVLATMFRFKSEQRWRKFDFQVGKNPS
RKDLNVQMMMEIESSLNSAEVVRTPCVYIRPDVDKATVNKIKEIIGHHGDICEDEEDATH
IIYPTVDPLEEEYARPVFRRGNHVLMHWYYLPDSHDTWAQADLPVDVPETVNWECSRAEP
WRVSASWVLDLPQYNEWMNEEDYEVDANGKKKVHKLRLSVDELLPGAEPSGKGKKAGKRK
RSPSPPPTKHNKRKSRITKRRENEVEDEEDNASRDNTDAVPTPESEKAVETPTAAAEPPP
AEPPATPAPPLDSHDDSQGKHSDSNTQEMLIKEELEDNVTDQTHHIVVPSYSAWFDYNSI
HTIEKRALPEFFNGKNKSKTPEIYLAYRNFILDTYRLNPTEYLTSTACRRNLAGDVCAIM
RVHGFLEQWGLINYQLEAESRPTAMGPPPTSHFHVLSDTPSGLQPLVARRPAENAAVPKI
EAGLPNGAEAAPGAAKPELAALPAEPGLKLDQYRNAGGRGREWTEQETLLLLEGLELHRD
DWNRVAAHVGTRTQDECILHFLRLPIEEPYLQDSSSGGVLGPLAYQPIPFSKTGNPVMST
VAFLASVVDPRIASKATRAAMDEFSAIKDEVPAAMMEAHVKAAAEHGAAAALAATGIAGT
APPQEKAEKKEGAEVKTEAMDVEESEPAQKVKEEPAEPATAANEKEEPPADHTDEPPATV
DAKLQSAAAAALAAAAVKAKHLAGVEERKIKSLVALLVETQMKKLEIKLRHFEELEATME
REREGLEYQRQQLIQERQQFHLEQLKAAEFRARHQAHQRLQAESGAAPAAAADAPAPAPE
PALPAAHSAHSAHAAHA
NT seq 2754 nt   +upstreamnt  +downstreamnt
atgactgctatatgtcctaaaaaggacggagggccaaatgttgatttttttcaatctcca
gaatctctagctcaatttgatcaaattcgtgtttggttgcagaaaaattgcaaaaagcat
gttcagactgacccgccaaccaaggaggggcttgcccagctggtggtgcagctaatacag
taccaggagaacaaacttgggaagaatgcttcggatccaccatttatcaggcttccaatg
aaagtgttcatggacatgaagccgggcggttctctgtgcactgtgctcgccaccatgttc
cgcttcaagtcggagcagcggtggcgcaagttcgacttccaggtcggtaagaacccgtcg
cggaaggatctgaatgttcagatgatgatggagattgagtcttccctcaacagcgcagaa
gtggtccgcactccctgtgtctacattcgtcctgatgtagacaaagctactgttaacaag
atcaaggagattatagggcatcatggagacatttgtgaggacgaagaagacgcgactcac
ataatctacccgacggtagatccgctcgaagaagagtacgcgcggccggtctttcgtcgc
gggaaccacgtgctcatgcactggtactacctgcctgacagccacgatacctgggcgcag
gcggatttgcccgtggacgtccccgagacagtgaactgggaatgctctcgggcggagccg
tggcgcgtgtcggcgtcgtgggtgctggacctgccgcagtacaacgagtggatgaacgag
gaggactacgaggtggacgccaacggcaaaaagaaggtgcacaaactgcgtctatccgtg
gacgagctcctcccgggcgcggagccgtcgggcaaaggaaagaaggccggcaagaggaag
cgctcgccatcgccgccgcccaccaagcacaacaagaggaagagccgtataacgaaacgc
cgcgagaacgaggtggaggacgaggaagacaacgcttccagagacaacaccgacgcggtg
cccacgccagaaagcgagaaagctgttgagacgccgacggccgccgcggagccgccgccc
gcggagccgcccgccacgcccgcgccgccgctcgactcgcacgacgactcgcaggggaag
cattccgattccaacacgcaggaaatgttaataaaagaagaactggaggacaacgtaacg
gatcaaactcatcacatcgtggtaccttcgtactcggcttggttcgactataactccata
cacaccatagagaagcgcgccctgccggagttcttcaatggcaagaacaagtccaagacg
cccgaaatatacttggcctacaggaacttcatcctggatacataccgcctgaaccccacg
gaatacctgacttccaccgcgtgccgccgcaacctggcgggcgacgtgtgcgccatcatg
cgggtgcacggcttcctggagcagtggggactcatcaactatcagttggaggcggagtcc
cggcccacggcgatggggccgccgcccacgtctcacttccacgtgctctccgacacgccg
tccggcctgcagccactcgtggcaaggcgaccggcagagaacgcggcggtgccgaagata
gaggcggggctgcccaacggcgcggaggcggcgccgggcgcggccaagcccgagctggcc
gcgctgcccgccgagcccggcctcaagctcgaccagtatcgcaacgccggcggtcgcggt
cgcgagtggacagagcaagagacgctcttgttgctagaggggctggaactacatcgcgac
gactggaacagagtggcggctcacgtgggcaccaggacacaggacgagtgcatcctacac
ttcctcagactgcccattgaggagccatacttgcaagatagcagctcaggtggagtcctg
ggtccactggcataccagccgattccgttcagcaagaccggcaaccccgtgatgagcacg
gtcgcgttccttgcctcggtggtcgatccaaggatcgcttccaaggccactagggcagct
atggacgagttttctgctataaaggacgaggtgccggcggcgatgatggaggcgcacgtg
aaggcggcggccgagcacggcgccgccgccgcgctcgccgccaccggcatcgccggcacc
gcgccgccgcaggagaaagcggaaaagaaagaaggtgcggaagtgaagacagaagcgatg
gatgtagaggagagcgagcctgcacagaaagtgaaggaagaacccgccgagcccgccact
gccgccaatgagaaagaggaaccgcccgccgaccacactgacgaaccaccagccaccgtg
gacgccaaactacaatcagcagcagcggctgccctcgcagctgcggcggtgaaggccaaa
catctggccggcgtcgaggagaggaagatcaagtctctggtggccctgctggtggagacg
cagatgaagaagttagagatcaagctgcgccacttcgaggagctagaggccaccatggag
cgggagagagaaggtctagaatatcagcgacaacagctgatccaggagcgacaacagttc
cacctggagcagctcaaagcggccgagttcagggcgaggcatcaagcgcatcagagactg
caggcggagagcggcgcggcgccggcggccgcggcggacgcgcccgcgcccgcgcccgag
cccgcgctgcccgccgcgcactccgcgcactccgcgcacgccgcgcacgcttag

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