Amyelois transitella (navel orangeworm): 106131478
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Entry
106131478 CDS
T09957
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03008
Ribosome biogenesis in eukaryotes
atra03013
Nucleocytoplasmic transport
atra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106131478
03015 mRNA surveillance pathway
106131478
03008 Ribosome biogenesis in eukaryotes
106131478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106131478
03009 Ribosome biogenesis [BR:
atra03009
]
106131478
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106131478
mRNA cycle factors
Stress granule specific factors
106131478
Ribosome biogenesis [BR:
atra03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
106131478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
LRR_4
TAP_C
LRR_8
Tap-RNA_bind
Motif
Other DBs
NCBI-GeneID:
106131478
NCBI-ProteinID:
XP_013186044
LinkDB
All DBs
Position
20:complement(join(6399869..6400019,6400309..6400424,6400805..6400996,6401950..6402161,6402695..6402890,6403485..6403625,6403860..6403932,6404383..6404500,6404961..6405291,6405577..6405720))
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AA seq
557 aa
AA seq
DB search
MHSKKAQLSNYKKFLLNRVTTSPPIFEYIDSCLARDDEANHYSFHKIMVHNWPTSPEQLF
SVLNDYFSIMFIPIQFSSQNGFATFYTSSLSLIQKIMKLDFMFPFERNMYNMDILFNDKS
SADCFDNWISIEDIVGSVVSNRLNEKLELDLSNLCNDTEFSQKGLCFYRFNLLSFFKILM
LRMGRDTKFLNLSRNNLSQLPMDILNFFIKGNLIGINLSNNNITSLSELQRYSSKIEKIW
LEGNPVCEEMDAPTYIRQIMMKFPRVTEIDGVKLNENGLILPFIKNFAVTPDRHTKMLVE
KFLSLYFSHFDHSRIRIDKFYNSPASLTITTAFTPEDEKLLPSSFAVDGRNMIKIMDRRL
NRKEQEMKLNKKYFNTKKQVIDALYRFPETVHDPTTFCVDVVSKDINHMLLIIDGVFKVT
ADIPRNVFRFRRTFLFVTTIQNPTTCYFIRNEMLHLDYASPEMIQNSFLQPSRNLYDYAL
INPDPEEKNIVTNAFCYLTQLRKDEAVSRLKTYDWDIKKALKFFQQELKSDLIPMDKFEM
DLDEGHLSDEANMDEVD
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcactcaaaaaaagcacaattaagtaactacaaaaagtttttactcaatagagtaact
acatcaccgccaatatttgaatacattgattcttgtttagcgcgcgacgatgaagctaac
cattattctttccacaagatcatggtgcacaattggccaactagtcctgagcagcttttc
tctgtattgaatgattacttttcaattatgttcattcctatacagttctccagtcaaaat
ggatttgccacattttatacaagcagtttgtctttaatacaaaagattatgaaactcgat
ttcatgtttccgtttgaacgtaatatgtataatatggatatactttttaatgataaaagt
tcagcagactgcttcgataattggatttcgattgaggatattgttggcagtgttgtgagc
aaccgtcttaatgaaaaattagagttggatctctctaatctgtgcaatgatactgaattt
tcacaaaagggtttatgtttctaccgtttcaaccttttatcatttttcaaaatactcatg
ctaagaatgggaagagatacaaaatttctcaatttgagtaggaataatttaagccaactt
ccaatggatattttgaatttcttcataaaaggaaatcttattggtattaatttaagtaac
aacaatattacatcgttatctgagctgcagagatacagtagtaaaatagagaagatctgg
ctggaggggaatcccgtttgcgaagaaatggacgcgccgacgtacattagacaaattatg
atgaaattcccgagagtaaccgaaattgatggtgtgaaattaaatgaaaatggtttaata
ttgccattcatcaagaacttcgccgtgactccggacagacacactaaaatgttggtagaa
aagtttctcagtctgtacttctcgcattttgatcactcgagaataagaattgacaagttt
tataattcgccggcatccctcaccatcactacagcttttactcccgaggacgagaaactg
ctaccatccagtttcgccgtggacggtcgcaacatgatcaaaataatggacaggagattg
aacagaaaggaacaagagatgaaactcaataagaaatatttcaatacgaagaaacaagtg
atagacgcgctatacaggttcccggagactgtgcacgatcccaccacattctgtgtcgat
gttgttagtaaagatataaatcacatgctgttaatcatagacggagttttcaaagtcacg
gccgacatccctagaaacgttttccgattcagacgcactttcctctttgtcacgactata
cagaatccgacgacatgctactttataagaaacgagatgttacacttggactacgctagc
ccggaaatgatacagaatagtttcttgcaaccatcaagaaacttatacgactacgcgctc
ataaacccagacccagaagaaaaaaatattgtgaccaacgcattttgttacttgacgcag
ttaagaaaagatgaggcagtaagccgcctgaaaacgtacgactgggatataaagaaggcg
ttgaaattcttccagcaagaattgaagagtgatctgataccaatggacaaatttgaaatg
gatctggatgagggccacctatccgatgaagcaaatatggatgaagtagattaa
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