KEGG   Amyelois transitella (navel orangeworm): 106131530
Entry
106131530         CDS       T09957                                 
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03022  Basal transcription factors
atra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106131530
  09124 Replication and repair
   03420 Nucleotide excision repair
    106131530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106131530
   03400 DNA repair and recombination proteins [BR:atra03400]
    106131530
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     106131530
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     106131530
SSDB
Motif
Pfam: PH_TFIIH BSD CSRNP_N
Other DBs
NCBI-GeneID: 106131530
NCBI-ProteinID: XP_060805925
LinkDB
Position
20:join(9353071..9353224,9354542..9354743,9355884..9356020,9356794..9356995,9357756..9357861,9358855..9358980,9360171..9360404,9362025..9362123,9364377..9364503,9370036..9370214,9371870..9371992)
AA seq 562 aa
MTTSSEDVLLSVGHVRYKKGDGTLYVMNQRLAWMLENRDTVAVSHKYADIKTQKISPAGK
PKVQLQVVLHDGTCSTFHFVNPAGAEAQAKDRDQVKMLLQDLLPKFKRQIDGELEMKSRL
LSLHPSLKHLYEDLVISKVISSEEYWNTPTLKQYTDSNNIKQEAGVSGAFLADIQPQTDG
CNGLKYNLTQDIIDAIFKTYPAVRKKHIDYVPSKMTEAEFWTKFFQSHYFHRDRIASSSS
KDLFGECAKMDDHAIASAMRHTTLDLSVDLPQFSETIPLQEEETVERDKTDNNSIHRNMI
KRFNQHSIMVLKASQKTNSNNNNTNNNSSKTNNNKVIENGVKQTNGENKEHGEPPPEKKR
RILEKIHYEDLVESGEDRDVQELKLSKVERYLLGPSSQVSQSSAQLNNQPPLSALASICQ
AWSGGQGCARPARAGAGAAVAALGELSPGGALMRHHAAASMAQLIPPDVSRELHRLYLSC
GELLRSLWRALPPPGAAEDGARAALFYEALLRFRNVKLRPFEEKMLRDLTPLAATLTRHL
NQMIDTACNKYAMWQQRHAKLR
NT seq 1689 nt   +upstreamnt  +downstreamnt
atgacgacgtcttcagaggacgttctgctaagcgtaggtcatgttaggtacaagaagggt
gatggaactttatatgttatgaaccagagattagcatggatgcttgagaatcgagataca
gtggctgtttcccacaaatatgcggacatcaaaacgcaaaagatctcaccagctggtaaa
ccaaaggtccagttacaagtagtcctccatgacgggacatgttccacgtttcacttcgtc
aacccagccggtgcagaagcccaggctaaagacagagatcaggtgaagatgttgctacag
gatctcttgccgaagttcaagaggcaaattgatggagaattagaaatgaaatctaggtta
ttatcccttcacccatcattgaagcatttatatgaagacttggtgatatccaaggtgata
agtagtgaggaatattggaatacacccacgcttaaacaatatacagactccaataatatt
aaacaggaagcaggtgtatcaggagcgtttttagccgacatccaacctcaaacggatggc
tgcaacggtctcaaatacaacctgactcaggacataatagatgctatattcaaaacgtat
ccggctgtgaggaagaaacacatagactacgtgcccagtaagatgacagaagctgagttc
tggaccaaattctttcagtcacattattttcacagagaccgcatagcctcctcttcgagt
aaggaccttttcggggagtgcgccaagatggacgaccacgccattgcgtccgccatgagg
cacaccactttggatctgtcagtagatttacctcagttcagcgaaactatacctctacag
gaagaggaaacggtggagcgcgacaaaacggataacaactccatacatcgcaatatgatt
aagcggtttaaccaacactccattatggtgctcaaagctagtcaaaaaacaaatagtaat
aataataacacgaacaacaatagcagtaagacaaacaataacaaagtgatcgagaacggc
gtcaaacaaacgaacggagaaaacaaagaacacggggaaccgccgccggagaagaagcgc
aggatactggagaagatacattacgaagatctagtggaaagcggcgaggatcgagatgtg
caagagttgaaattgtccaaagtagagagatatctgctgggcccctcgtctcaggtgagc
cagagcagcgcccagctcaacaatcagccgccgctgtctgcgctcgcctctatatgtcag
gcgtggagcggcgggcagggctgcgcgcggccggcgcgcgcgggcgcgggcgcggccgtg
gcggcgctgggcgagctcagccccggcggcgcgctcatgcggcaccacgcggccgctagc
atggcgcaactaatccccccggacgtgtctcgcgaattacaccgcctctacctatcgtgc
ggggagctgctccgctcgctgtggcgcgcgctgccgccgcccggcgcggccgaggacggc
gcgcgcgcagctctcttctacgaggcgctgctgcggttccgcaacgtcaagctgaggcct
ttcgaggagaaaatgctacgcgatttgacaccgttagcggcgacactcacccgccatttg
aatcaaatgatagacacggcatgcaacaaatacgcgatgtggcaacagaggcacgccaaa
ctcaggtag

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