Amyelois transitella (navel orangeworm): 106131656
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Entry
106131656 CDS
T09957
Name
(RefSeq) tropomyosin isoform X1
KO
K11985
TRAF-interacting protein [EC:
2.3.2.27
]
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atra04121
]
106131656
Enzymes [BR:
atra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106131656
Ubiquitin system [BR:
atra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106131656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-C3HC4
zf-C3HC4_2
zf-RING_11
DUF7491
zf-C3HC4_3
zf-RING_10
zf-RING_Vps41
zf_RING_Vps8
PHD_NSD
ATG16
zf_RING_Vps8_fungal
zf-RING_16
FANCL_C
zf-ANAPC11
zf-C3HC4_4
Prok-RING_4
zf-RING_4
Zn_ribbon_8
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
106131656
NCBI-ProteinID:
XP_013186276
LinkDB
All DBs
Position
20:join(8111808..8111920,8112557..8112763,8113787..8114924)
Genome browser
AA seq
485 aa
AA seq
DB search
MKISCIICSELMKASDNLNVTKCGHIFHHSCLSDWKRRSLTCPQCRRVLSDISIFPLYPT
LSDDKTDVEDLQSTLNDTLQQVEKLNAAVEEKDRHITTVTQELNKNEEILKQYASEVDSL
NSVVEILEDELKTMETIKENLETEKSVSLQDTHRQSEEIRLLEEDTRHLKTEIIKLNERD
QNSQELALQLENQIASLNIDAQRSNMEIRNLEEELQHLQVETKRLQDEKEVLTEEMRRLA
KKKEYVRNEIHNIDIFPGIETQDIEEHAHSLQAEVESMNEDGHIKEEEEFLTKETPYLED
EFTSLVEPKYLEESKKSEHSKEDLDTIEEDQSLVEESPYLKDESITSVELKYLEESKKSE
YSDKDLHTIDEDQSLVDGNLCAKDEMQYNEKQVLKDDSLIGEILHSNEGEKCVEDKMQLI
EEEVKVLKEETQCSKLETECLLEQEQREIEEHCIKVPTMEEDTQGLAEEKQDDQKQVEQD
ITMIV
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaagatttcatgcataatttgcagtgaattgatgaaagcatctgacaatttaaatgtg
acaaaatgtggtcacatttttcatcacagctgtctctcagattggaaaagaagatcccta
acatgtcctcagtgtcgtcgtgtgctatcagatatttccatattccccctctacccaact
ctgtcagatgacaaaaccgatgttgaagatctgcagtcgaccctgaacgacacgctacag
caagtggaaaaacttaatgcagccgtcgaagaaaaagacagacatataacaacagtaaca
caggaattaaataaaaatgaagaaattttgaagcaatatgcatcagaagtggacagttta
aactctgtagtagaaatactcgaagatgaattgaagacaatggaaactatcaaagagaat
ttagagacagaaaagtccgtctccttacaagacacccaccgacagagtgaggagatcaga
cttttagaagaggatacacgacacttaaagactgaaatcataaaactaaacgaacgggat
cagaattcacaagaattggcgcttcagttggaaaatcagatagcaagtttgaacatagat
gcacaacggtcgaatatggaaatacgaaatttggaagaagagttgcaacatttgcaagtg
gaaacaaaacgtttgcaagacgagaaagaggtgttgacggaagaaatgcgacgtttggcg
aaaaagaaagaatacgttcgaaatgagatccacaatatcgatatatttccaggaatagaa
acacaagacatagaagaacatgctcatagtctgcaggcagaggtggaaagcatgaatgaa
gatggacatataaaggaagaagaggaattcttgacaaaagaaacgccatatttagaggat
gaatttacaagtttggtagaaccgaaatacttggaagaatctaaaaaatcagaacattcc
aaagaagatttagatactattgaagaagaccaaagtttagtggaggagtcaccatattta
aaagatgaatctataacttcggtagagctaaaatacttggaagagtctaaaaagtcagaa
tattcagataaagatttacatacaattgatgaagaccaaagcttagtggatgggaatctg
tgtgcgaaagatgaaatgcaatacaatgagaagcaggttttaaaagatgattctttaatt
ggagaaatattacattcaaatgaaggcgagaaatgcgtggaagacaagatgcaactaata
gaggaagaggtgaaagttttaaaggaagaaacacaatgctctaaattagaaacagaatgt
ttactagaacaggaacaaagggagatagaggaacattgtataaaggtaccaaccatggaa
gaagacacacaaggcttggcagaagagaagcaagatgaccaaaagcaagtcgagcaggat
ataacaatgattgtgtaa
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