KEGG   Amyelois transitella (navel orangeworm): 106131855
Entry
106131855         CDS       T09957                                 
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106131855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atra03041]
    106131855
   03036 Chromosome and associated proteins [BR:atra03036]
    106131855
Spliceosome [BR:atra03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    106131855
 Complex B
    106131855
 Complex C
   U2 SnRNP specific factors
    106131855
Chromosome and associated proteins [BR:atra03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    106131855
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG UTP20_N
Other DBs
NCBI-GeneID: 106131855
NCBI-ProteinID: XP_013186541
LinkDB
Position
5:join(6264228..6264255,6264408..6264673,6265908..6266034,6266469..6266548,6267285..6267479,6267580..6267772,6268295..6268545,6271934..6272123,6272748..6273031,6273917..6274120,6274327..6274525,6274720..6274878,6278899..6279191,6279532..6279690,6280117..6280305,6280562..6280744,6281281..6281459,6281751..6281996,6282376..6282588,6282769..6282985,6283253..6283411)
AA seq 1337 aa
MDKIPRTHEAIEAQIREIQSKKNELPENGSSKGVPRETYYDSDIYDNAGQGGKSRYDGYV
TSIAANDEVEDEDVENVPVSQKRGGYTAPASLLNDIAQSDKDYDPFADKRRPTIADREDE
YRQKRRRMIISPERMDPFAEGGKTPDVGSRTYTEIMKEQYLRAEETELRKKLLERAREGT
LKPVAQSNGEANKVAPAKRKGRWDQSSEDTPSAKKPVSATPSSQATPSWDTERGAWEETP
GAGGRGGETPGATPSARVWDATPGHATPGHATPGRDTPAQHASRRNRWDETPKTDRETPG
HNSGWAETPRTDRGVGVDTIQETPTPGTKRRSRWDETPGATPAAATPTPSHATPSHATPS
HATPSHATPTPHTPVFTPGGSTPVGVKAMAMATPTPGHVAAMTPEQLQAYRWEKEIDERN
RPYTDEELDAMFPAGYKVLPPPAGYVPIRTPARKLTATPTPLGGTPIGFFMQTEEAGGSA
AAAARLLDPQPKGAQQLPFMKPEDAQYFDKLLIDVDEDALSPEELKERKIMKLLLKIKNG
TPPMCKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV
RPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNT
TARAFAVVASALGIPSLLPFLKAVCRSKKSWQARHTGIKIVQQIAILMGCAILPHLKSLV
EIIEHGLVDEQQKVRTITALASAALAEAATPYGIESFDSVLKPLWKGIRTHRGKGLAAFL
KAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEPQYIM
DEILPHFFKHFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRIVDDLKDDNEQYRKM
VMESIEKILANLGAADIDSKLEEALIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKP
YLPQICGIILWRMNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYP
EVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGP
EFVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ
NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIY
AVCPLLEDALMDRDLVHRQTACAAIKHMALGVYGFGCEDALIHLLNHVWPNIFETSPHLV
QAFMDAVEGMRVALGPIKILQYALQGLFHPARKVRDVYWKIYNTLYIGGQDALVAGYPRI
QNDPNNHFQRYELDYIL
NT seq 4014 nt   +upstreamnt  +downstreamnt
atggataaaatacctaggacacatgaagctatcgaagctcaaattagagaaatacaatct
aaaaagaatgagttaccagaaaatggctccagtaagggtgtgccacgagaaacctattat
gacagtgatatatatgacaatgctggacaagggggcaagtcgaggtacgatggctatgtg
acttcaattgctgctaatgatgaagtagaagatgaagatgtagagaatgtacctgtatca
cagaaaaggggaggttatactgcaccagcttctttgctcaatgatattgcccagagtgat
aaagattatgatccatttgctgataaaagaagaccaaccattgcagacagagaagatgaa
taccgccagaaacggcgtaggatgattatatcacctgaacgtatggacccatttgctgaa
gggggcaaaacaccggatgttgggtctagaacctacacagaaattatgaaagaacagtat
ttgcgagctgaggaaacagaactgaggaaaaagcttttggaacgggcgcgagaaggaacc
ctgaaaccagtggcacaatcaaatggtgaagccaataaggtggctccggcaaaacgtaaa
ggaagatgggatcaaagctcagaagatactccttctgctaagaaacctgtttcggccaca
cccagctcccaagctactccatcttgggatacagagagaggcgcatgggaagagacgccg
ggtgcgggcgggcgcggcggcgagacgcccggcgcgacgccgtcggcgcgcgtgtgggac
gccacgccgggccacgccacgccgggccacgccacgccgggccgcgacacgcccgcgcag
cacgcctccaggcgcaaccgctgggacgagacgcccaagactgaccgcgaaacccccggc
cacaacagcggctgggcggagactcctcgcaccgaccgcggcgtcggcgtcgacacgata
caagagacgccgacgccgggcaccaagcggcggtcgcgctgggacgagacccccggcgcc
acgcccgccgccgccacgcccacgccatcgcacgccactccgtcgcacgcgacgccatcg
cacgccacgccatcgcacgcaacgccaacgccgcacacgcccgtcttcacaccgggagga
tcaactcctgtgggagtgaaagctatggcaatggccacacccacgcccggtcacgtggcc
gccatgactcccgagcagcttcaagcgtaccgctgggagaaagaaatagacgagcgaaac
cgtccctacaccgacgaagaattggatgccatgttcccagctgggtacaaggttttgccc
ccaccggccggttacgtgccgatccgcacgccggcgcgcaagctgacggcgacgccgacc
ccgctgggcggtaccccaatcggctttttcatgcagacggaggaggcgggcggctcggcg
gcggcggcggccaggctgctcgacccccagcccaagggcgcgcagcagctgccgttcatg
aagccggaggacgcgcagtacttcgacaagctgctcatagatgtggacgaggacgcgctt
tcgcctgaggaacttaaggagaggaagattatgaagctgctgctcaagattaagaatgga
accccgccaatgtgcaaagctgccttacgccagatcactgacaaagcgcgcgagttcgga
gcgggtccgctgttcaaccagatattgccgctgctcatgagccctacactcgaggaccaa
gaacgacatttgctggttaaagtcatcgacaggatcttgtataaacttgacgacttggtc
cgaccttatgtgcacaaaattttggtggtgatcgaaccgcttctaatcgacgaagactac
tacgctcgcgtcgaaggcagggagataatctcgaacttggcgaaggcggccgggctggcc
actatgatctcaaccatgcggcccgatatcgacaatatcgacgagtacgtgcgcaacacc
accgctagagcgttcgctgttgtggcttcggctttaggtattccatcgcttctgcctttc
ttgaaggctgtttgtcgctcaaagaagtcttggcaagcgcgacacaccggtatcaaaatc
gtgcaacagattgccattttgatgggatgtgctatattgcctcatctcaaatcacttgtg
gaaattattgagcacggactggtcgacgagcagcaaaaagtgcgcaccatcacggcttta
gcgagcgcagccctggccgaggccgccactccgtacggcatcgaatcattcgactccgtg
ctcaagcccctctggaaaggtatccgcacccaccgaggaaaaggtctggctgcgttcctc
aaggccattggttacctcataccgctcatggacgccgaatacgccaattattatactcgg
gaagtgatgcttatcctcatccgtgagtttcagtcgcccgatgaggaaatgaagaagatt
gtgttgaaggtagtaaaacagtgctgtggcacggacggtgtggagccgcagtacataatg
gacgagatcttgccgcacttcttcaaacatttctggaatcatcgcatggccctggacagg
cggaactaccgccaactcgttgacaccactgtggaaatcgctaacaaagtcggtgcatca
gaaataataaacagaattgttgacgatttgaaagacgacaatgaacagtacagaaagatg
gtgatggaatccatagagaaaattcttgccaatttgggcgcggccgatatcgactcaaaa
ctcgaggaagccttaatcgacggcattttatatgccttccaagaacaaaccacagaggac
gtggtaatgctaaacggtttcggcacgatagtgaaccagctgggcaagcgcgtgaagcct
tacctgccgcagatctgcggtataattctgtggcgcatgaacaacaagtccgccaaagtg
aggcagcaggccgccgaccttatatcgagaatcgctgtcgtcatgaagacgtgtcaggag
gaaaaattaatgggacatcttggtgtcgtcctttacgaatacttgggtgaagagtaccct
gaagtgttgggatctatattgggagctctcaaagcaatcgtcaacgtcattggtatgact
aaaatgacaccgcccatcaaagatcttctcccgagacttacaccaattttgaagaacaga
cacgaaaaagtacaagagaattgcatagatttggttggtcgtatcgccgatcgtgggccc
gagtttgtgtctgctagggaatggatgagaatatgcttcgagttgttggaactcctgaag
gctcacaaaaaagcaattagaagagcgacagtcaatacattcggttacattgcaaaagct
atcggtccacatgacgtattagcaaccctgctaaataacttgaaagtacaggaacgacag
aacagagtatgtactactgtcgcgattgccattgtggcggagacatgttcgccattcaca
gtattgcccgctttgatgaacgagtatagagtccccgagttgaacgtgcaaaatggagtt
ctgaagtcattgtctttcttgttcgagtatattggagaaatgggcaaagactatatttat
gctgtttgcccattattagaagacgctcttatggacagagatttggtgcatcgtcaaact
gcgtgtgcagcgataaaacacatggcactcggcgtttatggatttgggtgcgaggacgcc
ctcatccatttgctgaatcacgtttggccgaacatttttgagacctcacctcatcttgtt
caggcgttcatggacgctgtggaaggaatgcgagttgcactcggacctatcaaaatactt
caatatgcattacagggactctttcatccagcgagaaaggttcgcgacgtttattggaaa
atctacaacacactgtacatcggaggacaggacgctttggtcgccggatatccaagaata
caaaacgatcccaataatcatttccagagatacgagttagactacatattgtaa

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