Amyelois transitella (navel orangeworm): 106131867
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Entry
106131867 CDS
T09957
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
atra03016
]
106131867
Enzymes [BR:
atra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
106131867
Transfer RNA biogenesis [BR:
atra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
106131867
Prokaryotic type
tRNA splicing ligases
106131867
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF5077
Emaravirus_P4
Motif
Other DBs
NCBI-GeneID:
106131867
NCBI-ProteinID:
XP_060810752
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All DBs
Position
5:complement(join(6546792..6547019,6547183..6547347,6547517..6548221,6548847..6548977,6549255..6549546))
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AA seq
506 aa
AA seq
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MVVRQYNEELKYLEKINPYCWRIKKGFQPNMNVEGVFYVNSTLEKLMLDELKNSCRPGMT
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMSDPKSIVSPGGVGFD
INCGVRLLRTNLHEKDVQPIKEQLAQSLFDHIPVGVGSKGIIPMNARDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIFD
RYAAGKMGIERVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKVE
EHMVDGKVKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNLDYKDVLTKLESLGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaagacaatataatgaagagcttaaatacttggagaaaattaacccttattgt
tggagaattaaaaaaggattccaacctaacatgaacgtggaaggagtattttatgtcaat
agcactttggagaaattaatgttggatgagctgaaaaattcgtgccggcctggtatgact
ggtggttttttgccgggcgttaaacagatagctaatgtagccgctttgccggggatcgtg
ggccggtcagtcggcttacccgatgtgcactcaggatatggatttgctattggtaatatg
gcagcatttgatatgtctgaccctaaatcaatagtttctcctggaggggttgggtttgat
atcaattgtggtgtgcgtttactaagaacaaatttacatgaaaaagatgtgcaaccaatc
aaggaacaacttgcgcaaagtttatttgatcacattcctgtaggagttggctcaaaaggc
attattccaatgaatgctcgtgacatggaggaagcattagaaatggggatggattggtct
ctacgagaaggatatgtttgggctgaagataaagaacattgtgaagaatatggacgaatg
cttaatgcagatccctctaaagttagccttcgagctaagaaaagaggtttgccgcaactt
ggaacattaggtgctggaaaccactatgcagagattcaagtagttgacgaaatatttgat
agatatgctgctggtaaaatgggtatagagagagttgggcaagtgtgtgttatgatccat
tcaggaagcaggggttttggccatcaagttgctactgatgccctagtacagatggaaaag
gccatgaaaagagacaatattgagaccaatgatagacagttagcttgtgccaggattaac
tctgtagagggtcaggattatttgaaagctatggctgcagctgccaattttgcatgggtt
aatcgtagttcaatgactttcctcactcgtcaagcatttgcgaaacaatttaaaatggca
ccagatgacttagacatgcatgtcatatatgatgtctctcataacattgccaaagtcgaa
gaacacatggtagatggaaaagtaaagacattacttgttcatagaaagggttccaccaga
gcattccctccgcatcatcctctgatacctgttgattaccaactgactggccaacctgtc
ctcattggtggtaccatgggaacatgcagttatgtcctcacagggacacaccagggaatg
acagagacatttggttctacatgtcatggagctggccgtgcactgtcccgtgctaaatct
agaagaaatcttgactacaaagatgtcttgactaaattagaatctttaggcatatccatt
cgagtggcgtcacccaagttagtaatggaggaagccccagagtcttacaaaaatgtaacc
gacgttgtcaacacatgccatgctgctgggatcagtaaaaaaactgtgaagttacgacca
attgcagttatcaaaggataa
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