Amyelois transitella (navel orangeworm): 106132071
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Entry
106132071 CDS
T09957
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03022
Basal transcription factors
atra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106132071
09124 Replication and repair
03420 Nucleotide excision repair
106132071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atra03021
]
106132071
03400 DNA repair and recombination proteins [BR:
atra03400
]
106132071
Transcription machinery [BR:
atra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106132071
DNA repair and recombination proteins [BR:
atra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106132071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
Phage_Coat_B
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
106132071
NCBI-ProteinID:
XP_013186840
LinkDB
All DBs
Position
13:join(6659349..6659410,6659692..6659893,6659986..6660125,6660246..6660408,6660767..6660865,6661330..6661505,6662269..6662400,6663225..6663333,6663939..6664073)
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AA seq
405 aa
AA seq
DB search
MADDEQDPKEYRWETGYEKTWEAIKEDEDGLVEGLVAEFAQKAARKAAAPRRGPVRLGMM
RHLLVAVDCSDAMNCQDLKPSRFLCTLKLLEKFVEEFFDQNPLSQLGIVAMKNKRAERIT
DLSGNVRKHIKAVQGLTNIPLTGEPSLQNTLEFAGRVLRPLPGHASRELLVLFASLTTCD
PSDITATIQGLKTDGIRCSVIGLAAEVRICKKLCQDTGGDYGVVLDDVHYRSLLLDYTNP
PPRARALDAGLVKMGFPHCAPPTTETDPSNSADPPITVCMCHLEEGEGVGGEGHLCPQCR
SKYCSLPAQCRTCGLTLASAPHLARSYHHLFPVEPYEEVPNEGQAQYCFGCLRPFTDVDK
QIFRCPRCLEYYCWECEAVVGGSLHVCPACAARPALYQRLPDTSK
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatgagcaagatccaaaagaataccggtgggaaacaggttacgaaaagaca
tgggaagccataaaagaagacgaggatggcttggtggaaggattagtggccgagtttgcc
cagaaagcggcgcgcaaagctgccgctcctcggcgcggtccagtcagactaggcatgatg
cggcatctccttgtggccgtcgattgctctgatgccatgaactgccaggatttgaagcca
tcacgattcctgtgcactttaaagttattggaaaagttcgtagaggagttcttcgatcaa
aatccattgagtcagcttggcattgtggcaatgaagaacaagagagcagagagaatcact
gacttgtctggaaatgttaggaaacatattaaagctgttcaaggattgacaaacatcccc
ctgacaggagagccgtcattgcagaacacactggagtttgctggacgtgtgctccgacct
ttgccagggcatgcatctagggaactacttgtattgtttgcttcactcaccacatgtgac
ccctcggatataactgctacgatccagggtttgaagacagacggaataagatgttcggtc
attggtttagcagctgaagtaagaatatgtaaaaagttatgtcaagatactggcggagat
tatggggtagtattggacgacgtccactatcgctccttgctcctggactacacgaatccc
ccgccgcgggcgcgcgctctggacgcggggctcgtcaagatggggttcccccactgcgcc
cccccgaccaccgagacagacccctccaacagcgcagatccgccaatcacagtttgcatg
tgccatttggaagagggcgaaggcgtcggtggggagggccacctgtgtccgcagtgccgc
agcaagtactgctcgctgccggcgcagtgtcgcacgtgcgggctcacgctcgcctccgcg
cctcatctcgccagatcgtatcaccacttgttccctgtagaaccttatgaagaggtaccc
aatgaaggacaagctcaatactgttttggctgccttaggcctttcacagatgtcgacaag
cagatcttccgctgcccgcgttgcctggagtactactgctgggagtgcgaggcggtggtg
ggcggctcgctgcacgtgtgcccggcctgcgccgcgcggcccgcgctctaccagcggctg
ccggacacgtcgaaatag
DBGET
integrated database retrieval system
