KEGG   Amyelois transitella (navel orangeworm): 106132117
Entry
106132117         CDS       T09957                                 
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03440  Homologous recombination
atra03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    106132117
   03450 Non-homologous end-joining
    106132117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atra03032]
    106132117
   03400 DNA repair and recombination proteins [BR:atra03400]
    106132117
DNA replication proteins [BR:atra03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    106132117
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     106132117
    BRCA1-C complex
     106132117
   NHEJ (non-homologous end-joining)
    MRX complex
     106132117
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 SMC_N SbcC_Walker_B AAA_29 ABC_tran AAA_16 SlyX AcylCoA_DH_N AAA_13
Other DBs
NCBI-GeneID: 106132117
NCBI-ProteinID: XP_013186900
LinkDB
Position
13:join(6606934..6607191,6607765..6607948,6608118..6608303,6608826..6609039,6609390..6609481,6609642..6610285,6610359..6610595,6611527..6611685,6611944..6612057,6612412..6612609,6612894..6613040,6613506..6613721,6613921..6614081,6614671..6614905,6615197..6615403,6615792..6615988,6616265..6616369,6616556..6616672,6617122..6617368)
AA seq 1305 aa
MMAGIKSLAVRGIRSFGPEEADEQRILFDKPLTLILGQNGCGKTTIIECLRYAITGNMPP
GSRNECFVHDPKVNRSTEVLAQVKLKIVNAKDEQLEVSRSMKVTALQKKKTKFQTLDSFL
SIIDVNGKTKDISSRCADLDFVMYEQLGVSKAILNSVIFCHQEDSSWPLDEGKKVKERFD
EIFDADKYSDCFDRLRKIRKDYTVTLKLLEQEVSILTEKKQDLDKKKLEVVNGETEISET
ELKLAELTTELKTITDKIKTISQLERNILTFETEREKIKTKLEHCQSQEEELKTEIKNIF
EGTTPELDDAIKNYETTAVQKKKELDASYKKNSTFNKEEEKIANEKTSNEIKLNKLLLLE
SQNQEKIDKRKTMIVEVAKVAQIDDINEINTDEEADKCIERITGKINDLKGDLNEQKSAA
DAEEKRMQEAIDACRVAHSRHQEKISSKKTEINKNKKEIVKLDKSVNDANESKVKLEAME
KKCEDAEEDFKKAKSEMNAEECQQEINDDEKAVETHESELVELDEKIVKLQKQNDKIKER
ELIENNLKDKEKKFAVLKNKHKSSLTELLGNIPESGFALAINKLECDIRNEVDSMKQKLK
EKQLEQKSLETERKHVRESLNEKRSELTKAEDKMYQACGTQSYESTLAKITSTVETLQDE
QNVLQSSMFIFAKYKTQLKDNNCCPLCSRGFDNDSDVTDLITQLTTQVMNVPSKLEKVTE
ELQRNSAKKDELLSMKSINEKITTLKEKEIPNLETRLKDIETKITMLSDSADELSMAIIE
PEQKLQTAKQIQGDMPMLDRYTKELKADTEKYEKIKAQCAELESDMSLDDANAKRTDLRT
KISALRTRVKTNQKKLNLYNKKLQTMADKKNKLKEQLLNLQKKVQEIVTLQEKRKQLETD
EEKLNDELKELEDGTTPLKEELEEKEKAKAEVVKKNRAAIEDKNSFITKIVTAFDKVKAI
EAEIKQHIERNIQLEMDKIKEANDKLMEKQKQIMIDRDALTKRIDTLKDELAKQGTYKDD
LVRNLKMRKAQEEIENCKQAQVKNDENMSGLNREMLAEKEPLISQQTKIFREKAQTEGKL
GQLNLTLKQNKQELKKAEAKNIEKQYKEKFYELHVTRAIDKDIRDYSVALEKSLMEFHRE
KMENINLIIREMWRKIYRGNDIDYIEIKTEGSMTTDSDRRKYDYRVVQCKNGMEIDMRGR
CSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENITSLCSALGEIVQERMTQR
NFMFIIITHDREFIESLGNIDKVTHFYEVSRNDEGRSRIKRIRFS
NT seq 3918 nt   +upstreamnt  +downstreamnt
atgatggctggcattaaatctctagcagttcggggcatacggagttttggacctgaagaa
gctgatgaacaacggatattgtttgataaacccctaactcttattttgggtcaaaatgga
tgtggtaaaactactattatcgaatgtttacgctatgctatcaccggtaatatgcccccg
ggaagccgcaacgaatgcttcgtgcatgatcccaaagtaaacagatctacagaggtcctt
gctcaagtaaaactgaagattgtaaatgccaaggatgaacagcttgaggtgtcaagatct
atgaaagtaacagctctgcagaagaaaaagaccaaattccagacattagactcttttctt
tccattattgatgtgaatggcaaaactaaggatatatcatcaagatgtgctgatttggac
tttgtcatgtatgaacaattaggcgtatcaaaagcaatcctgaactctgtgatattttgc
catcaagaagattctagttggccccttgatgagggcaaaaaagttaaggagcgttttgat
gaaatttttgatgctgacaagtacagtgattgttttgatcgattaagaaaaataagaaaa
gattacactgtaactctgaaactattggaacaagaagtatctattttgacggagaagaaa
caagatttagacaaaaaaaaactggaagttgtgaatggtgaaactgaaatttctgaaact
gaacttaaattggctgaattaacaacagaattaaaaactattactgataaaattaagaca
atttctcagttagagagaaacattctaacttttgaaactgaaagggaaaaaattaaaacc
aaacttgagcattgtcaaagtcaagaagaggaactgaaaactgaaattaaaaacattttt
gagggaaccacccctgagttggatgatgctataaaaaactatgagacaacagcagtacag
aagaagaaagaattagatgcatcttataagaaaaattccactttcaataaagaggaagaa
aagatagccaatgaaaaaacttcaaatgagattaaactgaacaagttgcttttacttgaa
agtcagaatcaagagaaaattgacaaaagaaagacgatgattgttgaagtagcaaaggta
gcacaaattgatgatatcaatgaaataaatactgatgaagaggcagataaatgtatagag
agaattactggaaaaattaatgatctcaaaggagatctcaatgaacagaagtctgcagct
gatgctgaagagaaaagaatgcaagaagcgatagatgcttgtagggtggcacactcgcgc
catcaggagaaaataagttctaaaaagacagaaataaacaaaaataaaaaagagattgtt
aaattggataaatctgtcaatgatgccaatgagtccaaagttaagttggaagcaatggaa
aaaaaatgtgaagatgctgaagaggactttaaaaaggcaaagagtgagatgaatgcagag
gagtgccaacaggagatcaatgacgatgagaaggctgtggaaacacacgagagtgaactt
gttgaacttgatgaaaagattgtgaaactccaaaaacaaaatgataaaattaaagaacga
gaattaatagaaaacaatctaaaggataaagagaagaaatttgctgtactgaagaacaaa
cataagtcatcattgacagaacttttgggtaacatacctgaatctggttttgctctggcc
atcaacaagttggaatgtgacatacgcaatgaagttgattctatgaagcagaagttgaag
gaaaaacagttggagcaaaaaagtctagagactgaacgcaaacacgtgcgcgagtctctc
aatgaaaagcgcagtgagctgacaaaagccgaagacaaaatgtaccaagcgtgcggtaca
cagtcatacgagtccactcttgctaagataacgtccacagtggaaacacttcaggacgaa
caaaatgtgttgcaatcttccatgtttatctttgccaaatataagacacagctcaaagac
aacaattgctgtcccttgtgcagtcgagggttcgataacgattctgacgtaacagatctt
atcacccagctgaccactcaagtgatgaatgtaccttcaaaactagaaaaagttacggag
gagttacaaaggaactctgctaagaaagatgaactgcttagcatgaaatctatcaatgaa
aagataactacattgaaagaaaaagagataccgaacctcgaaactcgtttgaaggatatt
gaaacgaaaataacaatgctgtcggactcagcggacgaattgtcaatggcaattatagag
cccgagcagaagttgcagaccgccaagcaaatccagggtgacatgccgatgctcgaccgc
tatacgaaagaattgaaggctgatactgaaaagtatgagaaaataaaagcgcagtgcgct
gaattagaatcagacatgtcattggacgatgccaatgcaaagaggacagatttgaggacg
aaaatcagtgctcttcggactcgcgtgaagaccaaccaaaagaaactgaacctgtacaac
aagaagctgcaaaccatggctgacaagaagaataagcttaaggaacaactcctgaattta
cagaaaaaggtacaagaaattgtcacactgcaagaaaagagaaagcaattggaaacggac
gaggagaagttgaacgatgaactaaaggaattagaagatggcacaacgcctctcaaggag
gagctcgaggaaaaggaaaaagcaaaggctgaagttgtcaagaaaaatagggctgctata
gaagataaaaacagtttcataactaaaatagtaactgctttcgataaagtgaaagctatt
gaggccgaaatcaagcagcacatagagaggaatattcagcttgagatggacaaaataaaa
gaagctaatgacaagctgatggagaagcagaaacagatcatgatcgatagggacgcgctc
acgaaacgaattgacactttgaaggatgaattggctaagcaagggacttataaagacgat
ttagtaagaaaccttaagatgcgaaaggctcaagaggagatagagaattgcaagcaggcc
caagtgaagaacgacgagaacatgagtggactcaaccgtgagatgttagcggagaaggag
ccgttgatctcgcagcaaaccaagattttcagggagaaggcgcaaactgaagggaaattg
ggccaacttaatcttacattaaaacaaaacaaacaagaattaaagaaagctgaagctaaa
aacattgaaaagcaatataaggaaaagttctacgagttacatgtgaccagagccatagat
aaggatattagagattattctgtagcattggaaaagagtctcatggagttccacagggag
aaaatggagaatatcaatcttattattagggaaatgtggagaaagatttatcgtggtaac
gatatcgactacattgaaatcaagactgaaggcagcatgactactgattcagatcgtcgc
aaatacgattacagggtagtgcaatgcaagaacggcatggagatcgacatgcgcgggcgc
tgcagcgctgggcagaaggtgctcgcgtgtctcatcatacgactcgcacttgccgaaaca
ttcagttccagattcggaatcctggcgctggatgaacccacaacaaatctagatcaagaa
aacatcacgagtctctgctcggccctaggggaaatagtccaggagcggatgactcagaga
aacttcatgtttatcataattacccacgacagggaattcatcgagtcgctggggaacatt
gataaagtcactcatttctacgaagtctcaaggaacgacgaaggaagatccagaatcaag
aggatcagattttcataa

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