Amyelois transitella (navel orangeworm): 106132394
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Entry
106132394 CDS
T09957
Name
(RefSeq) histone-lysine N-methyltransferase 2D isoform X1
KO
K13196
zinc finger protein ubi-d4
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106132394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atra03041
]
106132394
03036 Chromosome and associated proteins [BR:
atra03036
]
106132394
Spliceosome [BR:
atra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
106132394
Chromosome and associated proteins [BR:
atra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106132394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAMD1_WH
PHD
PHD_4
Linker_histone
GDWWSH
Vhr1
PHDvar_NSD
Motif
Other DBs
NCBI-GeneID:
106132394
NCBI-ProteinID:
XP_013187248
LinkDB
All DBs
Position
7:complement(join(4828453..4828599,4828862..4829221,4829632..4830198,4830363..4830682,4831160..4831406))
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AA seq
546 aa
AA seq
DB search
MSEIKYKQQILAAIDHLRSRKSRPDLYRICKFMSKCYKVTPKDTKADLKRCIKEKSIIKV
DYKDNVSYRNAAKWRKKSSQSNNYSCNTEMASTSASSERRIITSAIATLIYQDQSFLENG
ISFDDLVKAAVAQESKYSKKQLEAIVNKELSSGSLVKLPNGNLALGPADHDGDSSDSFKF
EYNMDTNTKMTSSANSSCRSSPQRMRGRPKKRGGGASSTGLSSSTRNSGVRVGERRKMAK
KVFDPSDNNVPSKRKRGRPVGSLNKSTIKKRLLGANHSKPDKEGTPVSEGQLSLEGSADE
MEAEEPIPHETSGGVCSVCHIQKPRGSSERLVECKDCNNKAHLTCLQSGSGILKPRPDNT
WQCPHCKTCVVCCETNDAGVLTVCSICSDAYHALCHAPRIPERLKAWDHWECNNCLESRP
TVVGSPAIIPSQIDYNSQNSPPVDPFLKPHELDRASSKFGDDVPIDPSVPDVTNWTTDDV
YNYFIKHLPDAAPILKEQEFDGQAVIMARRADIVKGLGLPLGPALALYRIIVKLQTRKDD
WTMCWG
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagataaagtataaacaacagatacttgctgcaattgaccacttgcgctcgcgt
aaatcacgtccagatttatatagaatttgcaagtttatgtcaaagtgttataaagttact
ccaaaggatacaaaagctgatctaaaacgttgcataaaagagaagagcataatcaaagta
gattacaaggataatgtaagctacagaaacgctgctaagtggcgcaaaaaatcaagtcaa
agtaacaattactcttgtaatacagagatggcgagtacatcagcatcaagtgaacggaga
ataataacttctgccattgctaccctcatatatcaagaccaaagcttcttagaaaatggg
atttcatttgatgacttggtcaaagctgcagttgctcaagaatcaaaatattcaaagaaa
caattggaggctattgttaataaagaattatcatctggaagccttgtgaagttgcctaat
ggcaatttggctttggggccagcagaccatgatggtgatagctctgacagttttaaattt
gaatataatatggacacaaatacaaagatgacatcgtcagccaattcctcatgtcgatca
tcgccccaaagaatgagaggcaggccaaagaagagagggggaggagcatctagcactgga
ctcagtagcagcactcgaaattcaggagttcgagttggtgaaagaagaaaaatggccaag
aaagtttttgatccttcagacaataatgttccaagtaaaagaaaaagagggagacctgtc
gggtctttgaataaaagcactataaaaaagagactattgggtgcaaatcatagtaaacca
gataaagaaggaacacctgtatctgaaggtcaattgtcactggaaggtagtgccgatgaa
atggaagctgaagaaccaattcctcatgaaacatctggaggtgtctgctcagtctgccac
atccaaaaacctaggggatccagtgagaggctagtggaatgcaaagattgtaacaacaag
gctcatttaacttgtcttcagtcagggtcgggtattttgaaaccacgcccagacaacaca
tggcagtgcccacattgcaaaacctgcgtggtttgttgtgaaacaaatgatgctggcgtc
ttgacagtgtgcagtatatgctcggatgcatatcatgctctttgccatgcacctcgaatt
ccagagagattgaaagcgtgggatcattgggagtgcaataattgtcttgaatcacgccct
acagttgtggggtcacctgcaatcattccgagccaaattgactacaattcacaaaattct
cctccagtagatccatttcttaaaccacacgaattagatagagcttcatcgaaattcggt
gatgatgttccaatagatccaagtgtaccggatgttacaaactggacaacagatgatgtt
tataactattttataaaacatttgccagatgcagcacctattttgaaagagcaggaattc
gacggtcaagctgtgataatggcaagaagagctgatattgtcaagggattaggacttcca
cttggacctgcactagcattatatcgtattatagttaaactacagacaagaaaagatgat
tggaccatgtgctggggctag
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