Amyelois transitella (navel orangeworm): 106132706
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Entry
106132706 CDS
T09957
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 isoform X2
KO
K04955
hyperpolarization activated cyclic nucleotide-gated potassium channel 2
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
atra04040
]
106132706
Ion channels [BR:
atra04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
106132706
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GFIT
Motif
Pfam:
Ion_trans_N
Ion_trans
cNMP_binding
Ion_trans_2
IFT20
Motif
Other DBs
NCBI-GeneID:
106132706
NCBI-ProteinID:
XP_013187666
LinkDB
All DBs
Position
19:complement(join(6369589..6370220,6370365..6370629,6371729..6371947,6372127..6372276,6373961..6374098,6375219..6375355,6375749..6375912,6407025..6407301,6455317..6455531,6527392..6527438))
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AA seq
747 aa
AA seq
DB search
MSLRSLHRRLSSANNTCDDGGGGAATGTGGGRTASLRLANGRVAAQSAEQLPHSPADCAS
VRISIDNTNTCCTDSLVTALDDETLLLGDADMSLKQGSGTGKVHFGGLDDVSLYGTPVEP
APPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIRQKAAGHWVIHPCSSFR
FYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQD
NAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFLIFNQDFSESFQILHAGRALRILRL
AKLLSLVRLLRLSRLVRYVSQWEEVYFLNMASVFMRIFNLICMMLLIGHWSGCLQFLVPM
LQGFPPNSWVAINELQEAFWLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMWLTMLSMIS
GATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHRYQG
KFFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQPGDI
IIKEGTIGNKMYFIQEGIVDIVMANGEVATSLSDGSYFGEICLLTNARRVASVRAETYCN
LFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHREDDTTSEGNTINAVVN
ALAAEAEHVSLSDDSVARLSERSLGLALQPLQAASCRMAGVALPGLGVAAALPRPKSEHD
FSSAQTPHPPLSAAGAAFHKSDAGIAP
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgcgcagcctacaccggcggctttcgtccgctaacaacacatgcgacgatggt
ggaggcggcgcggcgacaggcaccggcggcggtcggacggcgtcgctgcgactcgcgaac
ggtcgggtcgcggcgcagtcggcggagcaactaccgcactcgccggccgactgcgcctct
gtgcggatctctatagacaacaccaacacatgctgcacagactcgctcgtcaccgccctg
gacgacgagacattattactgggcgacgccgacatgtcgctgaagcagggcagcggcacc
gggaaggtccacttcggtgggttggacgatgtgtctctgtacgggacgccagtggagccc
gccccgccggcaccagacgccaagcaaggcttcctccgcaaccaactgcaagccctgttc
cagcccaccgacaacaaactggcgatgaaactcttcggctccaagaaggccctgatgaag
gagaggatccggcagaaggcggcgggacactgggtcatacatccgtgcagtagttttaga
ttctactgggacctttgtatgttattacttctggtcgccaacctcatcatcttgccggtc
gccatctccttcttcaacgatgacctcagcacgcgttggatcgccttcaactgtctctcg
gacactatattccttatagatatcgttgttaattttagaacaggaataatgcagcaggat
aatgcagaacaagtgatattagatcccaagttaatagcgaagcactatttgaggacatgg
ttcttccttgacctcatctctagtataccactagattatatatttttgatcttcaatcag
gattttagcgaaagctttcaaatccttcacgcgggtcgagccttaaggatactgcggtta
gcgaagcttctctctctggtgcggctgctgcggctgtccaggctcgtccgatatgtgtcc
caatgggaggaagtttattttctcaacatggcatcagtgttcatgcggatattcaacttg
atctgcatgatgttgttgatcgggcactggtctggttgtcttcagttccttgtgcctatg
ttgcaaggatttccaccaaactcatgggttgcaatcaacgaacttcaggaagctttttgg
ttggagcagtactcgtgggcgttgttcaaggcgatgtctcatatgctctgcatcggttac
ggtcgattccctccacaatctctcacagacatgtggctgactatgctttccatgatctcc
ggagccacctgctacgccctgttccttggacacgccaccaatctcatccaaagtcttgac
tcctcgcgcaggcagtatcgtgaaaaggtaaaacaagtggaagaatacatggcataccga
aaacttcctcgggagatgcgacaacgcattaccgagtactttgaacaccggtatcaagga
aagttcttcgacgaggaactgatcttaggggagttaagtgagaagctccgagaagacgtc
atcaactacaactgccggtcgctggtcgcctccgtgcctttcttcgccaatgccgactct
aactttgtatccgacgttgttactaaactgcgttatgaagtcttccagcctggtgacatc
atcataaaagaaggaacaatcggaaacaaaatgtacttcatccaagaaggcatagtagac
atcgtgatggccaacggcgaagtcgcgaccagtctctccgatgggtcctacttcggtgaa
atctgtctactgaccaacgctcgccgcgtcgcgtccgtccgagccgagacctactgtaac
ttgttctccctctccgtggaccatttcaacgccgttctcgaccaatacccactcatgcgg
cgaacaatggagagcgtcgccgccgaacggctcaacaagatagggaaaaaccccaacctg
gtagcgcatcgagaagatgacaccacgtcagaaggaaacacgattaatgccgtcgtgaat
gcactagccgcagaggccgagcacgttagcttgtcggacgacagcgtcgcgcggctgtcg
gagcgatcgcttgggcttgcgctgcagccgctacaagcggcatcgtgccgtatggccggc
gtggccctgcccgggctgggcgtggcggccgcgttgccgcgccccaagtcggagcacgac
ttcagctcggcgcagacgccgcacccgccgctgtcggccgccggcgccgcgttccacaag
tcggacgccggcatcgcgccctga
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