Amyelois transitella (navel orangeworm): 106133030
Help
Entry
106133030 CDS
T09957
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106133030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106133030
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106133030
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
106133030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
106133030
NCBI-ProteinID:
XP_013188074
LinkDB
All DBs
Position
23:complement(join(2685830..2686096,2686414..2686662,2686844..2687011))
Genome browser
AA seq
227 aa
AA seq
DB search
MDPEKLKDIGKICIPGMRLCLLNKEFISGPGTYELKGYIYAALAGVLKMEEDEKTKITIV
SVESPRTPSILPKTGDIVTAKVTVVNSRMVQCVILCVGPSVLVRPYRGVLKKEDIKSTDK
DRIDPYKCFRPGDVILARVLPMTEIHWYHLSTAENELGVVIATAEGSPQRVGMVPISWSE
MQCPKTLAKEPRKVARVIPETINQALFTVDKKIEGEKEKATNTRQQS
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atggatccagaaaagctaaaagacataggtaaaatatgtatacccggtatgagattatgt
ttattgaataaagaattcatatctggaccaggaacatatgaattgaaagggtatatatat
gctgctttggctggtgtgttgaaaatggaggaagatgaaaaaacaaaaattaccattgta
tcagtagaaagcccaagaacaccaagtatactgccaaaaaccggtgatatagtgactgcc
aaagtaacagtggtaaactcaagaatggtacaatgtgtaatcttgtgtgtgggaccttca
gtgcttgtgagaccttatcgaggagtgctgaagaaagaagacataaaatctacagacaaa
gacagaatagacccgtataaatgtttccgaccgggtgatgttatactggcaagagttctt
cctatgacagaaatacattggtaccatttatcaacagcagaaaatgaacttggagtggtg
atagcaacagcagaaggatcaccacagagagtggggatggtgcctatcagctggtctgaa
atgcaatgccctaagaccctagcaaaggaacctagaaaagttgcccgagtcattccagag
acaataaatcaagccttattcacagttgataaaaaaattgagggtgaaaaagaaaaggca
acaaatacaagacaacaatcttga
DBGET
integrated database retrieval system
