KEGG   Amyelois transitella (navel orangeworm): 106133067
Entry
106133067         CDS       T09957                                 
Name
(RefSeq) fibril-forming collagen alpha chain
  KO
K19719  collagen type II alpha
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:atra00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106133067
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:atra00536]
    106133067
Glycosaminoglycan binding proteins [BR:atra00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106133067
SSDB
Motif
Pfam: Collagen COLFI VWC FnI_RECK
Other DBs
NCBI-GeneID: 106133067
NCBI-ProteinID: XP_060802258
LinkDB
Position
10:complement(join(9592785..9592931,9593229..9593450,9594290..9594462,9594841..9595062,9595321..9595506,9595644..9595932,9596088..9596303,9596466..9596735,9597120..9597253,9597758..9598018,9598242..9598386,9598569..9598766,9599196..9599357,9599463..9599632,9599860..9600157,9600321..9600617,9600701..9600799,9601307..9601513,9601811..9601935,9602242..9602371,9602825..9602984,9603389..9603539,9603737..9603784,9604030..9604077,9604157..9604328))
AA seq 1509 aa
MWWYARAACVALLVLPAASKELGEDVSRVEEELPQAQEPDLINYDDYNPTEFDEDENAVI
DFTNQQRGQSQLPGSVGVTRRPPLSPSTRAPLPPRPLPRCIDMGRTWSEGERWKRDNCTL
CQCFSGRVNCTTARECLFRNGVSPAVNASPSTPVRGAPGRPGDEGPLGPPGVPGVNGVPG
APGIPGPAGPMPDIHAIQAYLAQMAASTGGGDKGPTIDPYAFMQASVGAPGIRGIPGPQG
PPGPQGFQGPRGEPGEPGLPGPLGPPGERGLPGIPGKDGSPGEDGEPGPPGAAGQPGPRG
TPGVPGIQGLKGHRGYDGKDGAKGEQGLQGEKGPTGLPGPLGPTGPVGPVGARGERGREG
PPGPPGIRGADGPQGPPGVMGNVGKTGAPGFPGTPGAKGDQGAIGPKGSQGAQGPRGESG
RPGQPGEVGAPGIPGRDGVNGEKGIQGSQGPAGPQGFPGPRGTPGVAGESGTPGSKGIPG
QPGERGLKGDSGPRGELGAPGPRGLPGSVGPEGKRGKRGLRGPAGNVGPQGERGQQGMRG
LPGADGPMGAKGHPGERGGVGLPGLKGSSGDPGRAGPQGTPGPRGIIGRPGIAGKTGPQG
ERGIPGADGRPGEQGPQGLQGPPGMMGRPGERGLQGEPGKDGETGQAGPQGPKGDAGRDG
SPGVQGPQGPVGAAGERGPTGPPGPNGFPGMPGSAGLPGSPGKEGEPGLAGPVGPPGPSG
PQGERGFTGERGLPGQPGPVGEKGETGAQGSDGPPGPEGQRGGKGHSGPMGAMGLPGPRG
LTGPAGEKGERGTAGPPGSDGPTGRQGDQGPQGPMGPAGPPGEPAERGEPGTPGVPGEAG
APGSPGERGQPGSQGVPGLPGPTGLTGMPGLKGDRGYAGAKGQEGSPGSPGLVGEQGLRG
LPGQVGAKGARGEQGHKGEAGHAGLPGRPGDTGPAGPQGSTGPAGAPGIPGAKGATGDSG
RPGAPGPIGLTGPSGPEGPKGERGAEGETGPQGLMGPSGPPGERGPSGLPGMVGAPGPQG
LRGNQGESGAPGKSGADGAPGPAGTPGLQGPPGPMGEQGPEGRPGKQGPPGISGRPGDKG
PMGQPGQSGPAGPPGLQGSAGPTGPPGPAGERGPRGEVGSPGVDGPQGPAGKQGPPGLDG
LKGERGEQGADGSKGHAGLPGLPGMVGAPGRQGERGLPGTAGPAGKDGEPGTRGPPGRDG
SPGPQGPSGPPGPRGPSGDTGRHGAPGPPGPPGPPGPAGEGLAYDAAALAAMLQQGSVKG
PDPLGDDPNLLPARFFKDDMTPAEKKDVVMKAYERLKVSLDKFLRPDGSKDAPGKTCGDI
KYHHPDFESGQYWIDPNGGDINDAILVYCDLETGSSCVYPKPMMSKDIAYRGREKEAWLS
EMEEGFTITYKADHTQLTYLQLLSSRATQNVTFHCRRTVGYFDPATNNYRRGIKLLAYND
AEILPKANNRLRYRALLDECQYKKDEWAQTIVQFETDKPGRLPLLDVGIRDVGRPNQMFR
VELGLACFV
NT seq 4530 nt   +upstreamnt  +downstreamnt
atgtggtggtacgccagagcggcgtgcgtggcgttgctggtgctaccagctgcttccaaa
gagttgggcgaagatgtctccagggtggaggaagagctacctcaagctcaggaaccagac
cttatcaattacgacgattataacccgaccgaatttgatgaggatgaaaacgctgtgata
gactttactaatcagcaaagggggcaatcgcaattgccaggttctgtcggcgtgaccaga
agaccgcctctttcgccttcaacccgagcgccattaccacctcggccattacctcgatgt
atcgacatgggtcggacctggtctgaaggcgagcgctggaagagggacaactgtaccctc
tgccaatgcttctccggccgagtcaactgcaccacggcgagagagtgcctctttcgtaat
ggagttagccccgcagtgaatgccagcccatcaaccccagtgaggggtgcgcccggtcgc
ccgggagacgaggggccattaggaccaccaggcgtgcccggggtgaatggggtacctggg
gcacctggtatacctggacctgctggacctatgcctgacattcacgctatccaggcgtat
ctggcacaaatggccgcttcaactggcggcggtgataagggacccaccatcgatccttat
gccttcatgcaggcttctgtcggcgcgccaggcattcggggaattccaggtccacaaggt
cctcccgggccgcaaggtttccagggtccccgaggagagcccggtgaacctggtttgccg
ggaccattgggaccaccaggagagaggggacttccaggaataccaggaaaagacggttca
ccgggagaggacggggaacctggaccaccaggtgcagcgggacaaccagggcccaggggc
acacctggggtacctggaatacagggtctgaaggggcatcgagggtacgatggcaaggac
ggggcaaagggcgaacagggactgcagggtgaaaagggacccactggcctgcctggacct
ttggggcctacaggacccgtgggtccagtgggcgcacggggagaacggggacgtgaagga
cctccaggtcctccaggtattcgaggagctgacggtccacaaggacctcctggagtcatg
ggaaacgttggtaaaacgggtgcccctggtttccctggtacacctggtgcaaaaggcgac
caaggcgctattggacctaaaggcagccaaggtgcacaaggacccagaggcgagtccggc
agacctgggcagcccggggaagtgggcgcacctggtatacccggacgggatggggtgaat
ggagaaaagggtatccaaggctcgcaaggccctgctgggccacaaggatttcctggacct
agaggcacaccgggtgtggcgggtgagtctgggacacctggctctaaaggaatacctgga
caacctggagaaagaggattaaaaggtgattctggccctagaggtgagcttggtgctcct
ggccccagaggattgcctggcagtgtcggaccagagggcaaacggggaaaaagaggtctt
aggggacctgctgggaatgttggtcctcaaggtgaaaggggtcaacagggtatgagagga
ttgcctggggctgatgggccaatgggtgccaaaggtcaccctggagaaagaggaggcgtt
ggattacccgggcttaaaggaagttctggagatcctggcagagctggaccacaaggtact
cctgggcctagaggtatcattggacgacctggcatagccgggaaaactggaccacaaggc
gaaaggggtataccaggtgcagatggcaggcctggtgaacaagggcctcaagggttacag
ggcccccctggaatgatgggacggccaggagaaaggggacttcagggggaacctggtaaa
gacggcgagactggtcaagcgggaccccaaggccctaaaggagacgccggtagagatggg
agccctggtgtgcaaggacctcaaggtccagtaggagcggctggtgaacggggacctact
ggcccacctggacctaatggattccctggaatgccaggaagtgctggtttaccagggtct
cccggtaaagaaggtgaacctggattagctggccccgttggaccacctggtccctctgga
cctcagggtgaaaggggatttactggcgaaagaggtcttccaggtcaaccaggacctgta
ggcgagaaaggagaaactggagcccagggatctgatggacctcctggtcccgaaggacaa
aggggcggtaaaggccactctgggccaatgggagctatgggtttacctggtccccgtggc
ttaactggacccgcgggtgaaaagggtgaaagaggaactgccggcccccctggaagtgat
ggaccaacaggtcggcaaggcgaccaaggacctcaaggtcctatgggacccgccggtcca
cctggagaaccagctgagcgaggtgaaccgggaaccccaggtgttcccggagaagccggt
gccccagggtcaccaggagaacgtgggcagccggggtcacaaggcgtcccgggtttgccg
ggcccaaccggcctaacgggcatgccggggttgaagggagatagaggatatgctggtgct
aagggacaagaaggatcaccgggtagcccaggattagtaggagagcaaggcttgcgtggt
ttacccggccaagtgggggcgaagggagctcgaggggaacagggacacaaaggagaggct
ggacatgcaggtttgcctggaagacctggggatacaggcccggcgggtcctcaaggcagt
accggaccagcaggagcaccaggcataccaggtgcaaaaggtgcgaccggtgattctgga
cgtcctggggctccgggtccgatcgggcttactggtccctctggccccgaaggtccgaaa
ggagagcgtggcgctgagggtgaaacgggaccgcaagggttgatgggtccgtccgggcct
ccgggagaaaggggaccgagtgggttaccgggaatggtcggggcaccaggtcctcaggga
ctacgtggaaatcagggtgaaagtggtgcgcctggcaaatcgggtgccgatggggctccg
gggccagccgggaccccaggattgcaaggcccacccgggcccatgggcgaacagggtccc
gaaggccgaccgggtaagcagggcccacctgggatttccggaagacctggagataaaggt
cccatgggtcagccggggcaatcaggaccagctggacctcctggattacagggttctgca
gggcccacgggtccaccaggacccgctggagaaagaggcccgagaggggaagtgggttcc
ccaggagttgacggaccccagggccccgcaggcaaacaggggcctcccggcttggacggc
ctgaaaggagagagaggtgaacagggagcagatgggtcaaaaggtcacgcagggctgcct
gggttgccggggatggtcggtgctccgggtagacagggtgaaaggggactacctggtaca
gcgggtccagcagggaaggacggagaacctggcactagaggtcctccgggtcgtgacggt
agtcccggtccacaaggcccgtccggcccacccggtcctcggggcccatctggggacacc
ggtcgtcacggggctcctggcccacccggacctccaggtccaccaggtccggctggagaa
gggctggcttacgatgctgctgcacttgctgctatgcttcaacaaggctccgtcaaaggt
ccagacccactaggcgacgaccccaacctgctccccgctcggttcttcaaagacgacatg
acccccgctgagaagaaagatgtcgtgatgaaggcttacgaaaggctcaaggtctccctg
gacaagttcttgagaccagacggatctaaagacgctccgggcaaaacttgcggcgatatc
aagtaccatcatccggactttgaaagcggtcaatactggatcgaccccaatggaggcgac
atcaacgacgccattttggtctactgcgacttagagactggcagcagctgcgtgtacccc
aaacctatgatgtccaaggacatcgcgtatagaggaagagagaaagaggcttggctcagt
gagatggaagaaggattcactatcacatacaaagccgaccacacccagctcacatacctg
caattactctcatctcgcgccacccaaaatgtgaccttccactgccgccgaaccgtgggc
tacttcgacccagccacgaacaactaccgcagaggcatcaaactcttagcttacaacgac
gcggagatactgccaaaggcaaataacaggctgaggtacagagcgcttctggacgagtgt
cagtacaagaaggacgagtgggcacaaacaatagttcagttcgagacagacaagcctggc
aggctcccactgctggacgtcgggatccgggacgtggggagacccaatcagatgttccgg
gtcgaactgggactcgcctgttttgtataa

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